Locus 6297

Sequence ID 2L_DroMel_CAF1
Location 17,538,483 – 17,538,586
Length 103
Max. P 0.999493
window10058

overview

Window 8

Location 17,538,483 – 17,538,586
Length 103
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 79.04
Mean single sequence MFE -31.25
Consensus MFE -27.10
Energy contribution -27.35
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -3.11
Structure conservation index 0.87
SVM decision value 3.65
SVM RNA-class probability 0.999493
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17538483 103 + 22407834
--ACCCACACACAUCCUGCUGGGGGUCGUGGCCCUGGACCGAAAGCAAGGUGCCACCCGCUGCCCAGCACCACCUCCCACCCCCAAACCCU-CAGCGCCC-------AACCUC
--...............(((((((((.((((((((....(....)..))).)))))..(((....)))..................)))))-))))....-------...... ( -34.10)
>DroSec_CAF1 55461 105 + 1
ACACACACACACAUCCUGCUGGGGGUCGCGGCCCUGUACCGAAAGCAAGGUGCCACCCGCUGCCCAGCACCACCCACAACCUCCAACCCUC-CAACGCCC-------AACCUC
................(((((((.(..((((....(((((........)))))...))))).)))))))......................-........-------...... ( -26.10)
>DroSim_CAF1 54962 90 + 1
ACACACACACACAUCAUGCUGGGGGUCGUGGCCCUGGACCGAAAGCAAGGUGCCACCCGCUGCCCAGCACCACCCACAACC----------------CCC-------AACCUC
...................(((((((.((((((((....(....)..))).)))))..(((....)))..........)))----------------)))-------)..... ( -30.30)
>DroEre_CAF1 56510 102 + 1
----ACACACACAUCCUGCUGGGGGUCGUGGCCCUGGACCGAAAGCAAGGUGCCACCCGCUGCCCAGCAGCACCCCCAACC-CCAACCCCCC--UCGUCCAAGCCCCAA----
----...............(((((((.((((((((....(....)..))).)))))..(((((...))))))))))))...-..........--...............---- ( -34.50)
>consensus
__ACACACACACAUCCUGCUGGGGGUCGUGGCCCUGGACCGAAAGCAAGGUGCCACCCGCUGCCCAGCACCACCCACAACC_CCAACCCCC____CGCCC_______AACCUC
................((((((((((.((((((((....(....)..))).)))))..))).)))))))............................................ (-27.10 = -27.35 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:32 2006