| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,533,517 – 17,533,621 |
| Length | 104 |
| Max. P | 0.606400 |
| Location | 17,533,517 – 17,533,621 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 83.77 |
| Mean single sequence MFE | -27.86 |
| Consensus MFE | -19.76 |
| Energy contribution | -20.56 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.606400 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17533517 104 - 22407834 UGGAAAUGUUGU-------GCUAAGGAAUUUCAUUCUGGCUAAUAUGUUUAGUCAGUUUGGAUGCACUUUGCUGGGGAGGAAACAUGUGCUUUUCCCAAAUUAAUUUGAGU ............-------((.(((....((((..((((((((.....))))))))..))))....))).))((((((((..(....)..))))))))............. ( -25.50) >DroSec_CAF1 51005 103 - 1 -GGAAAUGUUGU-------UCUAAGGAAUUUCAUUCUGGCUAAUAAGUUUAGUCAGUUUGGAUGCACUUUGCUGGGGAGGAAGCAUGUGCUUUUCGCAAAUUAAUUUGAGC -.........((-------((.((..(((((((..((((((((.....))))))))..))((.((((..((((........)))).))))...))..)))))..)).)))) ( -26.60) >DroSim_CAF1 49856 104 - 1 UGGAAAUGUUGU-------UCCAAGGAAUUUCAUUCUGGCUAAUAAGUUUAGUCAGUUUGGAUGCACUUUGCUGGGGAGGAAGCAUGUGCUUUUCGCAAAUUAAUUUGAGC (((((......)-------)))).((((.((((..((((((((.....))))))))..)))).((((..((((........)))).)))).))))................ ( -28.70) >DroEre_CAF1 51884 103 - 1 C-----UGUUGUGGAAAUGGCUAAGGAAUUUCAUUCUGGCUAAUAAGUUUAGUCAGUUUGGAUGCACUUUGCUGGGG---AAGCUCGUGUUUCUCCCGAAUUAAUGUGAGC .-----............(((.(((....((((..((((((((.....))))))))..))))....))).)))((((---((((....))))).))).............. ( -30.10) >DroYak_CAF1 51705 96 - 1 C-----UGAUGU-------GCUGAGAAAUUUCUUUCUGGCUAAUAAGUUUAGUCAGUUGAGAUGCACUUUGCUGGGG---AAGCAUGCGUUUCUCCCAAAUUAAGUUGAGC .-----......-------((.(((..(((((...((((((((.....))))))))..)))))...))).))(((((---((((....))))).))))............. ( -28.40) >consensus CGGAAAUGUUGU_______GCUAAGGAAUUUCAUUCUGGCUAAUAAGUUUAGUCAGUUUGGAUGCACUUUGCUGGGGAGGAAGCAUGUGCUUUUCCCAAAUUAAUUUGAGC ...................((.(((....((((..((((((((.....))))))))..))))....))).))((((((..((((....))))))))))............. (-19.76 = -20.56 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:29 2006