Locus 6294

Sequence ID 2L_DroMel_CAF1
Location 17,530,491 – 17,530,586
Length 95
Max. P 0.523404
window10054

overview

Window 4

Location 17,530,491 – 17,530,586
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 95.89
Mean single sequence MFE -23.19
Consensus MFE -23.17
Energy contribution -22.93
Covariance contribution -0.24
Combinations/Pair 1.05
Mean z-score -0.99
Structure conservation index 1.00
SVM decision value -0.02
SVM RNA-class probability 0.523404
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17530491 95 - 22407834
UGGAAAUUUAAACGGCCUGGCCAUUAAGCGAAACGAGUUGGAUAUAGUUUAAUGGCUUCAUUUUUUGGAAGGAGUUCACUGUUUCCUUGGUUCUG
.((((((...(((..(((.((((((((((.................))))))))))((((.....))))))).)))....))))))......... ( -23.93)
>DroSec_CAF1 48076 95 - 1
UGUAAAUUUAAACGGCCUGGCCAUUAAGCGAAACGGUUUGGAUAUAGUUUAAUGGCUUCAUUUUUUGGAAGGAGUUCACUGUUUCCUUGGUUCUG
.............((((.(((((((((((.................))))))))))).........(((((.((....)).)))))..))))... ( -23.13)
>DroSim_CAF1 46870 93 - 1
UGUAAAUUUAAACGGCCUGGCCAUUAAGCGAAACGAGUUGGAUAUAGUUUAAUGGCUUCAUUUUUUGGAAGGAGUUCACUGUUUCCUUGGUUC--
.............((((.(((((((((((.................))))))))))).........(((((.((....)).)))))..)))).-- ( -23.13)
>DroEre_CAF1 48865 94 - 1
UGUAAAUUUAAACGGCCUGGCCAUUAAGCGAAACGAGUUGGAUAUAGUUUAAUGGCUUCAUUU-UUGGGAGGAGUUCACUGUUUCCUUGGUUCCG
............(((((.(((((((((((.................)))))))))))......-..(((((.((....)).)))))..))..))) ( -23.13)
>DroYak_CAF1 48676 94 - 1
UGUAAAUUUAAACGGCCUGGCCAUUAAGCGAAACGAGUUGGAUAUAGUUUAAUGGCUUCAUUU-UUGGGAGGAGUUAACUGUUUCCUUGGUUCUG
.............((((.(((((((((((.................)))))))))))......-..(((((.((....)).)))))..))))... ( -22.63)
>consensus
UGUAAAUUUAAACGGCCUGGCCAUUAAGCGAAACGAGUUGGAUAUAGUUUAAUGGCUUCAUUUUUUGGAAGGAGUUCACUGUUUCCUUGGUUCUG
.............((((.(((((((((((.................))))))))))).........(((((.((....)).)))))..))))... (-23.17 = -22.93 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:28 2006