Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,520,941 – 17,521,061 |
Length | 120 |
Max. P | 0.505945 |
Location | 17,520,941 – 17,521,061 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.33 |
Mean single sequence MFE | -37.40 |
Consensus MFE | -23.72 |
Energy contribution | -23.50 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.41 |
Mean z-score | -1.32 |
Structure conservation index | 0.63 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.505945 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17520941 120 + 22407834 UUUAACCGGUGCCCAGCAGAACUAUGCGCGAAAGUAUGUCAUAUCCAUAGAUCUUCUGGCCUUCGAUUACGAAGUUCUCACGGUGGAAGAGCCGCAAAGGCAGGGAUUAUCGGGACCCGA ......(((..(((.(((......)))((....)).......((((.....(((((((..(((((....)))))..).......))))))(((.....)))..))))....)))..))). ( -35.61) >DroVir_CAF1 43205 120 + 1 CCUUACCGGCGCCCAGCAGAAUUAUGCGCGUAAAUAUGUCAUUUCCAUAGAUCUGCUGGCCUUUGACUAUGAGGUUCUGUCGCUGGAUGAGACACAAAUCAAAGGUGUAUCUGCGCCCGA .....(.(((((((((((((.(((((.((((....))))......))))).))))))))(((((((...((..(((..(((....)))..))).))..))))))).......))))).). ( -38.60) >DroPse_CAF1 40003 120 + 1 CCUCACUGGCGCCCAGCAGAACUAUGCACGAAAGUAUGUCAUUUCCAUAGAUCUGCUUGCCUUUGACUACGAGGUGCUCUCGCUGGAGGAGAACCAAAUCAAGGGUAUCACUGCACCCGC ..(((..((((...((((((.(((((...((((........))))))))).))))))))))..)))...((.(((((((((....)))).(((((........))).))...))))))). ( -37.20) >DroGri_CAF1 49722 120 + 1 UCUGACCGGUGCCCAGCAGAAUUAUGCACGUAAAUAUGUGAUUUCCAUAGAUCUGUUGGCCUUUGACUAUGAGGUCCUGUCGCUGGAGGAAACACAAAUGGCAGGUACUCCGGCGCCCGA .....(.(((((((((((((.((((((((((....))))).....))))).)))))))............(((..(((((((...(.(....).)...)))))))..))).)))))).). ( -42.10) >DroAna_CAF1 46142 120 + 1 UUUGACUGGCGCUCAGCAGAACUACGCCCGAAAAUACGUAAUAUCCAUAGAUUUGCUAGCUUUCGACUACGAGGUCCUGUCGCUGGAAGAGACCCAAAUCCAGGGCCUUAAAGCGCCUGA .......((((((...............(((((.((.((((.(((....)))))))))..))))).....(((((((((....(((.......)))....)))))))))..))))))... ( -33.70) >DroPer_CAF1 40079 120 + 1 CCUCACUGGCGCCCAGCAGAACUAUGCACGAAAGUAUGUCAUUUCCAUAGAUCUGCUUGCCUUUGACUACGAGGUGCUCUCGCUGGAGGAGAACCAAAUCAAGGGUAUCACUGCACCCGC ..(((..((((...((((((.(((((...((((........))))))))).))))))))))..)))...((.(((((((((....)))).(((((........))).))...))))))). ( -37.20) >consensus CCUCACCGGCGCCCAGCAGAACUAUGCACGAAAAUAUGUCAUUUCCAUAGAUCUGCUGGCCUUUGACUACGAGGUCCUCUCGCUGGAGGAGACCCAAAUCAAGGGUAUAACUGCACCCGA .....((((((((.((((((.(((((...((((........))))))))).)))))))))(((((....))))).......)))))................((((........)))).. (-23.72 = -23.50 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:21 2006