Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,854,137 – 1,854,232 |
Length | 95 |
Max. P | 0.644712 |
Location | 1,854,137 – 1,854,232 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 76.06 |
Mean single sequence MFE | -21.02 |
Consensus MFE | -12.00 |
Energy contribution | -12.00 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.10 |
Mean z-score | -1.57 |
Structure conservation index | 0.57 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644712 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1854137 95 - 22407834 AUACAGCGAUGUCCUUCGGGGCAGGGCUUGUUGGCGCAGAAAUCAACCUAGAA---AACACACAA--CAGAGAAACGGGCACAAAUCAAAGCAUAUUGUG .....(((((((((....))))...((((.(((((.(.....((.........---.........--..)).....).)).)))....))))..))))). ( -18.55) >DroVir_CAF1 36688 95 - 1 AUACAACGAUGUCCUUCGGGGCACGGCUUAUUGGCGCAGAAAUCAACCUAAAA---CAGACGAAGG-CAAUAAGAAAAGGCAAGCUCUCAGCUUAUUG-A ......((.(((((....))))))).(((((((.(..................---........).-))))))).......((((.....))))....-. ( -20.67) >DroPse_CAF1 25962 88 - 1 AUGCAGCGAUGUCCUUCGGGGCAUGGCUUGUUGGCGCAGAAAUCAACCUGAAA---AACAAAAAA---------AAUAGCACAAAUCAAAGCAUAUUGAG ((((.((.((((((....)))))).))(((((....(((........)))...---)))))....---------................))))...... ( -25.00) >DroGri_CAF1 34667 97 - 1 AUACAGCGAUGUCCUUCGGGGCACGGCUUAUUGGCGCAGAAAUCAACCUAAAA---CAAAUGGAGAACAAUUGCAUGCGAAAAACUCAAAGCAUAUGGUA .....(((.(((((....)))))).(((....)))))........(((.....---(((.((.....)).))).((((............))))..))). ( -20.40) >DroWil_CAF1 30783 83 - 1 AUACACCGAUGUCCUUCGGGGCACGGCUUGUUGGCGCAGAAAUCAACCUAAAACCAAAUACA-----------------CAAAAAUCAAAGCAUAUUGAA .....(((.(((((....))))))))...(((((........)))))...............-----------------......((((......)))). ( -16.50) >DroPer_CAF1 25917 88 - 1 AUGCAGCGAUGUCCUUCGGGGCAUGGCUUGUUGGCGCAGAAAUCAACCUGAAA---AACAAAAAA---------AAUAGCACAAAUCAAAGCAUAUUGAG ((((.((.((((((....)))))).))(((((....(((........)))...---)))))....---------................))))...... ( -25.00) >consensus AUACAGCGAUGUCCUUCGGGGCACGGCUUGUUGGCGCAGAAAUCAACCUAAAA___AACACAAAA_________AAGAGCAAAAAUCAAAGCAUAUUGAA ......((.(((((....)))))))(((....)))................................................................. (-12.00 = -12.00 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:24 2006