Locus 629

Sequence ID 2L_DroMel_CAF1
Location 1,854,137 – 1,854,232
Length 95
Max. P 0.644712
window1029

overview

Window 9

Location 1,854,137 – 1,854,232
Length 95
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 76.06
Mean single sequence MFE -21.02
Consensus MFE -12.00
Energy contribution -12.00
Covariance contribution -0.00
Combinations/Pair 1.10
Mean z-score -1.57
Structure conservation index 0.57
SVM decision value 0.23
SVM RNA-class probability 0.644712
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1854137 95 - 22407834
AUACAGCGAUGUCCUUCGGGGCAGGGCUUGUUGGCGCAGAAAUCAACCUAGAA---AACACACAA--CAGAGAAACGGGCACAAAUCAAAGCAUAUUGUG
.....(((((((((....))))...((((.(((((.(.....((.........---.........--..)).....).)).)))....))))..))))). ( -18.55)
>DroVir_CAF1 36688 95 - 1
AUACAACGAUGUCCUUCGGGGCACGGCUUAUUGGCGCAGAAAUCAACCUAAAA---CAGACGAAGG-CAAUAAGAAAAGGCAAGCUCUCAGCUUAUUG-A
......((.(((((....))))))).(((((((.(..................---........).-))))))).......((((.....))))....-. ( -20.67)
>DroPse_CAF1 25962 88 - 1
AUGCAGCGAUGUCCUUCGGGGCAUGGCUUGUUGGCGCAGAAAUCAACCUGAAA---AACAAAAAA---------AAUAGCACAAAUCAAAGCAUAUUGAG
((((.((.((((((....)))))).))(((((....(((........)))...---)))))....---------................))))...... ( -25.00)
>DroGri_CAF1 34667 97 - 1
AUACAGCGAUGUCCUUCGGGGCACGGCUUAUUGGCGCAGAAAUCAACCUAAAA---CAAAUGGAGAACAAUUGCAUGCGAAAAACUCAAAGCAUAUGGUA
.....(((.(((((....)))))).(((....)))))........(((.....---(((.((.....)).))).((((............))))..))). ( -20.40)
>DroWil_CAF1 30783 83 - 1
AUACACCGAUGUCCUUCGGGGCACGGCUUGUUGGCGCAGAAAUCAACCUAAAACCAAAUACA-----------------CAAAAAUCAAAGCAUAUUGAA
.....(((.(((((....))))))))...(((((........)))))...............-----------------......((((......)))). ( -16.50)
>DroPer_CAF1 25917 88 - 1
AUGCAGCGAUGUCCUUCGGGGCAUGGCUUGUUGGCGCAGAAAUCAACCUGAAA---AACAAAAAA---------AAUAGCACAAAUCAAAGCAUAUUGAG
((((.((.((((((....)))))).))(((((....(((........)))...---)))))....---------................))))...... ( -25.00)
>consensus
AUACAGCGAUGUCCUUCGGGGCACGGCUUGUUGGCGCAGAAAUCAACCUAAAA___AACACAAAA_________AAGAGCAAAAAUCAAAGCAUAUUGAA
......((.(((((....)))))))(((....)))................................................................. (-12.00 = -12.00 +  -0.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:24 2006