Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,515,827 – 17,515,929 |
Length | 102 |
Max. P | 0.596373 |
Location | 17,515,827 – 17,515,929 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 81.75 |
Mean single sequence MFE | -21.97 |
Consensus MFE | -17.73 |
Energy contribution | -17.87 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.25 |
Mean z-score | -1.32 |
Structure conservation index | 0.81 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596373 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17515827 102 - 22407834 AAACUAUACACAAGCCAAAAUUCUGUUUCUCCACCACCAAAAUUGUUGUACUCACCUGCGUGAGCAGAGUGUGUGAUAGUAACAUGUCUGUCUCCUUUUGGU .............(((((((.............................((.(((((((....)))).))).))(((((........)))))...))))))) ( -23.90) >DroSec_CAF1 32302 102 - 1 AAACUCUGCACAAGCCAAAAUUCUUUUUCUCCAUUACCAAAAUUGUUGUACUCACCUGCGUGAGCAGAGUGUGCGAUAGUAGCAUGUCUGUCUCCUUUUGGU .............(((((((.....................((((((((((..((((((....)))).)))))))))))).(((....)))....))))))) ( -24.10) >DroSim_CAF1 32202 102 - 1 AAACUCUACACAAGCCAAACUUCUUUUUCUCCACCACCAAAAUUGUUGUACUCACCUGCGUGAGCAGAGUGUGCGAUAGUAACAUGUCUGUCUCCUUUUGGU ...................................(((((((.....((((..((((((....)))).))))))(((((........)))))...))))))) ( -23.00) >DroEre_CAF1 33276 97 - 1 GA-AUCUACUCAAGCUAAAAUUCUU-UUCUACACCACCAAAA---UUUUACUCACCUGCGUGAGCAGAGUGUGCGAUAGUAACAUGUCCGUCUCCUUUUGGU ..-......................-.........(((((((---.....(.(((((((....)))).))).).((((......)))).......))))))) ( -19.50) >DroYak_CAF1 33038 98 - 1 AA-AUCUACUCAAGCUAAAGUUCUUUUUCUCCACCACCAAUG---UUGUACUCACCUGCGUAAGCAGAGUGUGCGAAAGUAACAUGUCUGUCUCCUUUUGGU ..-................................(((((..---.......(((((((....)))).)))(((....)))................))))) ( -18.30) >DroPer_CAF1 35317 91 - 1 AA-AACUAUGCA-------AUUCUCUAAAAGCAUGAUCAGAA---AUGGACUUACCUGUGUCAGCAGAGUGUGCGAGAGCAACAUGUCCGUCUCCUUUUGGU ..-...(((((.-------...........)))))(((((((---((((((....((((....)))).((((((....)).))))))))))....))))))) ( -23.00) >consensus AA_AUCUACACAAGCCAAAAUUCUUUUUCUCCACCACCAAAA___UUGUACUCACCUGCGUGAGCAGAGUGUGCGAUAGUAACAUGUCUGUCUCCUUUUGGU ...................................(((((((........(.(((((((....)))).))).).(((((........)))))...))))))) (-17.73 = -17.87 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:20 2006