| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,511,316 – 17,511,416 |
| Length | 100 |
| Max. P | 0.664666 |
| Location | 17,511,316 – 17,511,416 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 81.69 |
| Mean single sequence MFE | -23.58 |
| Consensus MFE | -12.81 |
| Energy contribution | -13.21 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.664666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17511316 100 - 22407834 GAAGCGAUACAAGUUUCUGUCCCAAAAUAAAAGCGAAAAUUUCCCGGCAAAUAGUUG-GAAAACUGUUAAAAAUGCAACACAACU------UGCAUUGUAAGCCGGU (((((.......)))))..........................(((((.(((((((.-...)))))))...(((((((......)------))))))....))))). ( -26.60) >DroSec_CAF1 27855 100 - 1 GAACAGAUACAAGUUUCUGUCCCAAAAUAAAAGCGAAAAUUUCCCGGCAAAUAGUUG-GAAAACUGUUAAAAGUGCAACACAACU------UGCAUUGUAAGCCGGU ..(((((........))))).......................(((((.(((((((.-...)))))))...(((((((......)------))))))....))))). ( -26.90) >DroSim_CAF1 27726 100 - 1 GAACAGAUACAAGUUUGUGUCCCAAAAUAAAAGCGAAAAUUUCCCGGCAAAUAGUUG-GAAAACUGUUAAAAAUGCAACACAACU------UGCAUUGUAAGCCGGU .....((((((....))))))......................(((((.(((((((.-...)))))))...(((((((......)------))))))....))))). ( -27.50) >DroEre_CAF1 28791 99 - 1 GAACAGAUACAAGUU-UUGUCACAAAAUAAAAGCGUACUUUUUCCGGCAAAUAGUUG-GAAUGCUGUUAAAAAUGCAACACAACU------UGCAUUGUAAGCUGGU ...(((.(((..(((-(((...))))))...(((((......((((((.....))))-)))))))......(((((((......)------)))))))))..))).. ( -20.00) >DroYak_CAF1 28495 100 - 1 GAACAGAUACAAGUUUUUGUCACGAAAUAAAAGCGAGCAUUUUCCGGCAAAUAGUUG-GAAUACUGUUAAAAAUGCAACACAACU------UGCAUUGUAAGCCGGU ............((((((((......)))))))).........(((((.((((((..-....))))))...(((((((......)------))))))....))))). ( -24.60) >DroPer_CAF1 30392 100 - 1 -------UUUAACUGUUUGUCACAGAAUAAAAAGGAAGUUUGCACGAAAAAUAGUUGUGAACACAGUCAAAUAUGCCAUUCAACUGCAUCCAGCAUUGCAAAUCUGU -------..............(((((.......(((.(((..(((........).))..))).((((..(((.....)))..))))..))).((...))...))))) ( -15.90) >consensus GAACAGAUACAAGUUUUUGUCACAAAAUAAAAGCGAAAAUUUCCCGGCAAAUAGUUG_GAAAACUGUUAAAAAUGCAACACAACU______UGCAUUGUAAGCCGGU ............((((.(((......))).)))).........(((((.((((((.......))))))...((((((..............))))))....))))). (-12.81 = -13.21 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:19 2006