| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,508,292 – 17,508,412 |
| Length | 120 |
| Max. P | 0.529873 |
| Location | 17,508,292 – 17,508,412 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.72 |
| Mean single sequence MFE | -41.82 |
| Consensus MFE | -24.41 |
| Energy contribution | -24.50 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.58 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17508292 120 + 22407834 CGUGGCUGAACAGGUGGCCAAGGUGACGGCCGAUAGCAAACUGGCGGAGGAGCAGCGUGAAAUUGUGAAGCUCGAUGAGAGCGCGGCCAAGGAGCAGGCUGCUGUAGCCCAAGAGAUCAA .(.(((((....((..(((..(....)(((((...((((..(.(((.........))).)..))))...((((.....)))).)))))........)))..)).)))))).......... ( -42.20) >DroVir_CAF1 28882 120 + 1 UGUUGCCGAGCAGGUGGCCAAAGUGACGGCAGACAGUAAAAUUGCUGCCGAGCAGCGUGAAAUGGUCAAAGAGGAUGAACAGGCGGCCAAGGUGCAGGCAGCUGUGGCCCAAGAGAUCAA .((((((..(((..(((((...((..((((((.((((...)))))))))).)).((.((...(.(((......))).).)).)))))))...))).)))))).................. ( -43.10) >DroGri_CAF1 33777 120 + 1 UGUGGCCGAGCAGGUGGCCAAAGUGACGGCGGACAGCAAAGUUGCCGCAGAGCAGCGGGAACUGGUCAAAGAGGAUGAGCAGGCGGCCAAAGUGCAGGCAGCCGUUGCCCAGGAGAUCAA ..((((((......))))))..(..(((((.(((.....((((.((((......)))).)))).)))...........((..(((.......)))..)).)))))..)............ ( -42.80) >DroWil_CAF1 71493 120 + 1 UGUGGCCGAACAGGUGGCCAAAGUUACAGCAGAUAGUAAAAUUGCCGAAGAGCAGAGGGAAGUUGUCAAACAGGAUGAGGAGGCGGCCAAAGAGCAGGCAGCCGUAGCUCAAGAGAUUAA ..((((((......)))))).((((((....(((((.....((.((..........)).)).)))))..............(((.(((........))).)))))))))........... ( -29.60) >DroMoj_CAF1 30171 120 + 1 CGUGGCCGAGCAGGUGGCCAAGGUGACGGCGGACAGUAAAUUGGCCGCCGAGCAGCGAGAGCUGGUCAAGGAGGAUGAGCAGGCAGCCAAGCAGCAGGCAGCCAUUGCUCAGGAGAUCAA ..((((((......)))))).(....)(((((.(((....))).)))))((.((((....)))).))...((...(((((((((.(((........))).)))..)))))).....)).. ( -52.20) >DroAna_CAF1 26374 120 + 1 UGUGGCCGAGCAGGUUGCCAAAGUCACGGCGGACAGCAAGCUGGCCGAAGAGCAGAGAGAAAUAGUCAAGCUGGACGAGAUGGCUGCCAAGGAGCAGGCGGCUGUGGCCCAGGAAAUCAA ((.(((((....(((((((..(((((...((..((((..(((........))).((.(....)..))..))))..))...)))))((......)).))))))).)))))))......... ( -41.00) >consensus UGUGGCCGAGCAGGUGGCCAAAGUGACGGCGGACAGCAAAAUGGCCGAAGAGCAGCGAGAAAUGGUCAAACAGGAUGAGCAGGCGGCCAAGGAGCAGGCAGCCGUAGCCCAAGAGAUCAA ..((((((......))))))..((((((((.............((((.....)...........(((......))).....))).(((........))).))))))))............ (-24.41 = -24.50 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:16 2006