Locus 6285

Sequence ID 2L_DroMel_CAF1
Location 17,508,040 – 17,508,134
Length 94
Max. P 0.512393
window10041

overview

Window 1

Location 17,508,040 – 17,508,134
Length 94
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 71.83
Mean single sequence MFE -20.65
Consensus MFE -11.74
Energy contribution -11.22
Covariance contribution -0.53
Combinations/Pair 1.32
Mean z-score -1.32
Structure conservation index 0.57
SVM decision value -0.04
SVM RNA-class probability 0.512393
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17508040 94 - 22407834
---------------------AUAUGAUAAUACCCCUCCCCCC-ACAUUCACACUCACUUUCUCUUUUGACUGAGCAGUGCCUUAAAGGUCUGGAUCAACUCCAGAUACGAAGUGG
---------------------....................((-((.(((.((((..(((..((....))..))).))))........(((((((.....)))))))..))))))) ( -20.80)
>DroVir_CAF1 28629 86 - 1
------------------------AAGUCG----GCU-C-UCUGGUUUUUUUACUCACUUUCUCUUUUGGCUAAGCAACGCCUUGAAGGUCUGUAUCAAUUCCAGAUAGGAUGUAG
------------------------......----.((-.-(((((..((..(((..((((((......(((........)))..))))))..)))..))..))))).))....... ( -21.10)
>DroGri_CAF1 33011 95 - 1
-------------UAAGUUC--UAAAAUGU----UCU-C-UCUGCGUUUUAUACUCACUUUCGCUUCUGGCUAAGCAGUGCCUUGAAGGUCUGUAUCAAUUCCAGAUAGGAUGUGG
-------------.......--....((((----(((-.-((((.(..((((((..(((((((.....(((........))).)))))))..)))).))..))))).))))))).. ( -22.80)
>DroSec_CAF1 24575 93 - 1
---------------------AUAUGAUAAUACCCCUCC-UCC-ACAUUUACACUCACUUUCUCUUUUGGCCAAGCAGUGCCUUAAAGGUCUGGAUCAACUCCAGAUACGAAGUGG
---------------------..................-...-...........((((((..((((.((((.....).)))..))))(((((((.....)))))))..)))))). ( -19.70)
>DroSim_CAF1 24497 93 - 1
---------------------AUAUGAUAUUACCCCUCC-UCC-ACAUUCACACUCACUUUCUCUUUUGACCGAGCAAUGCCUUAAAGGUCUGGAUCAACUCCAGAUACGAAGUGG
---------------------..................-.((-((.(((...........(((........))).............(((((((.....)))))))..))))))) ( -16.50)
>DroYak_CAF1 25083 104 - 1
AGAAUGUAGUGUC-GAU---CAUAAGAUACC---C---C-UCC-ACAUUUACACUCACUUCCUCUUUUGGCCGAGCAGUGACUUAAAGGUCUGGAUCAACUCUAGAUACGAAGUGG
.....(..(((((-...---.....))))).---.---)-.((-((........(((((..(((........))).))))).......(((((((.....))))))).....)))) ( -23.00)
>consensus
_____________________AUAAGAUAAU___CCU_C_UCC_ACAUUUACACUCACUUUCUCUUUUGGCCAAGCAGUGCCUUAAAGGUCUGGAUCAACUCCAGAUACGAAGUGG
...................................................(((((.((((.....(((......)))......))))(((((((.....)))))))..)).))). (-11.74 = -11.22 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:15 2006