Locus 6284

Sequence ID 2L_DroMel_CAF1
Location 17,507,029 – 17,507,149
Length 120
Max. P 0.982452
window10039 window10040

overview

Window 9

Location 17,507,029 – 17,507,149
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 91.67
Mean single sequence MFE -48.57
Consensus MFE -40.77
Energy contribution -40.72
Covariance contribution -0.06
Combinations/Pair 1.11
Mean z-score -3.04
Structure conservation index 0.84
SVM decision value 1.92
SVM RNA-class probability 0.982452
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17507029 120 + 22407834
UCGAGCAUUUGUCGCGCAUAUGCCGCAUCAUAAAGCAGCCGAGGAGUCAUGCUCUACUCAUCGGGGUUGGUGGCUCCGGACGCCAGAGCUUGACUCGAUUGGCUUCGCAUAUAUGCGACU
..........((((((.((((((.((........))((((((.((((((.(((((.....(((((((.....))))))).....))))).))))))..))))))..)))))).)))))). ( -52.40)
>DroVir_CAF1 27739 120 + 1
UCGAACAUUUAUCGCGCAUAUGUCGCAUCAUAAAGCAGCCACGUAGUCAUGCUCUGCUCAUCGGUGUCGGCGGCUCCGGGCGUCAGAGCUUGACUCGUUUGGCUUCGCAUAUAUGCGACU
...........(((((.((((((.((........))(((((((.(((((.((((((....((((.((.....)).))))....)))))).))))))))..))))..)))))).))))).. ( -45.50)
>DroGri_CAF1 32059 120 + 1
UCGAGCAUUUAUCGCGCAUAUGUCGCAUCAUAAAGCAGCCACGUAGUCAUGCUCUGCUCAUCGGUGUCGGUGGCUCCGGGCGCCAGAGCUUGACUCGACUGGCUUCGCAUAUAUGCGACU
.(((.......)))((((((((((((........))(((((((.(((((.((((((....((((.((.....)).))))....)))))).)))))))..)))))..).)))))))))... ( -45.40)
>DroEre_CAF1 24413 120 + 1
UCGAGCAUUUGUCGCGCAUAUGCCGCAUCAUAAAGCAGCCGAGGAGUCAUGCUCUACUUAUCGGAGUUGGAGGCUCCGGGCGCCAGAGCUUGACUCGAUUGGCUUCGCAUAUAUGCGACU
..........((((((.((((((.((........))((((((.((((((.(((((.....(((((((.....))))))).....))))).))))))..))))))..)))))).)))))). ( -54.40)
>DroWil_CAF1 70348 120 + 1
UUGAACAUUUAUCGCGCAUAUGUCGCAUCAUAAAGCAGCCACGUAGUCAUGCUCUACUCAUUGGGGUCGGUGGCUCCGGACGUCAGAGCUUGACUCGUUUGGCUUCGCAUAUAUGCGACU
...........(((((.((((((.((........))(((((((.(((((.(((((((((...(((((.....))))).)).)).))))).))))))))..))))..)))))).))))).. ( -43.50)
>DroAna_CAF1 25151 120 + 1
UUGAGCAUUUGUCGCGCAUAUGCCGCAUCAUAAAGCAGCCGAGGAGCCAUGCUCUGCUCAUCGGGGUCGGAGGAUCCGGACGCCAGAGCUUGACUCGAUUGGCUUCGCAUAUAUGCGACU
..........((((((.((((((.((........))((((((.(((.((.((((((..(.((.(((((....))))).)).).)))))).)).)))..))))))..)))))).)))))). ( -50.20)
>consensus
UCGAGCAUUUAUCGCGCAUAUGCCGCAUCAUAAAGCAGCCAAGGAGUCAUGCUCUACUCAUCGGGGUCGGUGGCUCCGGACGCCAGAGCUUGACUCGAUUGGCUUCGCAUAUAUGCGACU
...........(((((.((((((.((........))(((((...(((((.(((((.....(((((((.....))))))).....))))).)))))....)))))..)))))).))))).. (-40.77 = -40.72 +  -0.06)

alignment

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secondary structure

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dotplot

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Window 0

Location 17,507,029 – 17,507,149
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 91.67
Mean single sequence MFE -45.82
Consensus MFE -38.64
Energy contribution -38.17
Covariance contribution -0.47
Combinations/Pair 1.09
Mean z-score -2.83
Structure conservation index 0.84
SVM decision value 1.76
SVM RNA-class probability 0.975733
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17507029 120 - 22407834
AGUCGCAUAUAUGCGAAGCCAAUCGAGUCAAGCUCUGGCGUCCGGAGCCACCAACCCCGAUGAGUAGAGCAUGACUCCUCGGCUGCUUUAUGAUGCGGCAUAUGCGCGACAAAUGCUCGA
.(((((.(((((((..((((....((((((.((((((.((((.((..........)).))))..)))))).))))))...))))((........)).))))))).))))).......... ( -49.00)
>DroVir_CAF1 27739 120 - 1
AGUCGCAUAUAUGCGAAGCCAAACGAGUCAAGCUCUGACGCCCGGAGCCGCCGACACCGAUGAGCAGAGCAUGACUACGUGGCUGCUUUAUGAUGCGACAUAUGCGCGAUAAAUGUUCGA
.((((((((((.((..(((((....(((((.((((((.....(((.(.......).))).....)))))).)))))...)))))))..))).))))))).......(((.......))). ( -42.70)
>DroGri_CAF1 32059 120 - 1
AGUCGCAUAUAUGCGAAGCCAGUCGAGUCAAGCUCUGGCGCCCGGAGCCACCGACACCGAUGAGCAGAGCAUGACUACGUGGCUGCUUUAUGAUGCGACAUAUGCGCGAUAAAUGCUCGA
.(((((.(((((((..(((((..(((((((.((((((.((..(((.(.......).))).))..)))))).))))).)))))))((........))).)))))).))))).......... ( -41.60)
>DroEre_CAF1 24413 120 - 1
AGUCGCAUAUAUGCGAAGCCAAUCGAGUCAAGCUCUGGCGCCCGGAGCCUCCAACUCCGAUAAGUAGAGCAUGACUCCUCGGCUGCUUUAUGAUGCGGCAUAUGCGCGACAAAUGCUCGA
.(((((.(((((((..((((....((((((.((((((.(...(((((.......)))))....))))))).))))))...))))((........)).))))))).))))).......... ( -50.00)
>DroWil_CAF1 70348 120 - 1
AGUCGCAUAUAUGCGAAGCCAAACGAGUCAAGCUCUGACGUCCGGAGCCACCGACCCCAAUGAGUAGAGCAUGACUACGUGGCUGCUUUAUGAUGCGACAUAUGCGCGAUAAAUGUUCAA
.(((((.(((((((..(((((....(((((.((((((.(((..((..(....)..))..)))..)))))).)))))...)))))((........))).)))))).))))).......... ( -39.70)
>DroAna_CAF1 25151 120 - 1
AGUCGCAUAUAUGCGAAGCCAAUCGAGUCAAGCUCUGGCGUCCGGAUCCUCCGACCCCGAUGAGCAGAGCAUGGCUCCUCGGCUGCUUUAUGAUGCGGCAUAUGCGCGACAAAUGCUCAA
.(((((.(((((((..((((....((((((.((((((.((((.((.((....)).)).))))..)))))).))))))...))))((........)).))))))).))))).......... ( -51.90)
>consensus
AGUCGCAUAUAUGCGAAGCCAAUCGAGUCAAGCUCUGGCGCCCGGAGCCACCGACCCCGAUGAGCAGAGCAUGACUACGCGGCUGCUUUAUGAUGCGACAUAUGCGCGACAAAUGCUCGA
.(((((.(((((((..((((.....(((((.((((((.(...(((...........)))....))))))).)))))....))))((........))).)))))).))))).......... (-38.64 = -38.17 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:13 2006