Locus 6283

Sequence ID 2L_DroMel_CAF1
Location 17,504,428 – 17,504,547
Length 119
Max. P 0.581696
window10038

overview

Window 8

Location 17,504,428 – 17,504,547
Length 119
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 79.94
Mean single sequence MFE -32.15
Consensus MFE -19.91
Energy contribution -19.97
Covariance contribution 0.06
Combinations/Pair 1.23
Mean z-score -1.54
Structure conservation index 0.62
SVM decision value 0.10
SVM RNA-class probability 0.581696
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17504428 119 + 22407834
AAUUUGCCCAAGUUUCUUAACCAGGAUAUUCCCCUGUUCCAGGGCAUCACCUCUGAUCUGUUUCCUGGAACAGUUUUGCCGGAAGCGGACUACGUACUAUUCAAUAAAUGUACACAGAU
....(((((..(((....)))((((.......)))).....))))).....((((.(((((((((.((..........)))))))))))....((((............)))).)))). ( -32.40)
>DroVir_CAF1 25277 119 + 1
AAUUUGCCCAAGUUCUUGAAUCAGGAUAUACCGCUAUUCCAGGGCAUUACGUCCGAUCUGUUUCCGGGGGUCACACUGCCCGAGGCGGACUAUGUGCUCUUCAAUGAGUGCACGCAAUU
...((((...((((((((...)))))....(((((......(((((..((.((((.........)))).)).....)))))..)))))))).((..(((......)))..)).)))).. ( -35.00)
>DroEre_CAF1 21808 119 + 1
AAUUUGCCCAAGUUCCUCAACCAGGACAUUCCACUGUUCCAGGGCAUCACCUCUGAUCUGUUUCCUGGAACAGUUUUACCGGAAGCGGACUACGUGCUAUUUAAUAAAUGCACACAGCU
.....((...(((.((.(..((.((.....))(((((((((((((((((....)))..)))..)))))))))))......))..).)))))..((((............))))...)). ( -33.80)
>DroYak_CAF1 21451 119 + 1
AAUUUGCCCAAGUUCCUCAACCAGGACAUUCCACUGUUCCAGGGCAUCACCUCUGAUCUGUUUCCUGGAACCGUUUUGCCGGAAGCCGACUACGUUCUAUUUAAUAAGUGCACACAGCA
....(((....((.(((.....)))))....((((((((((((((((((....)))..)))..))))))))(((.(((.(....).)))..)))............))))......))) ( -25.50)
>DroMoj_CAF1 26562 119 + 1
AAUUUGCCCAAGUUCUUGAACCAGGAUAUACCACUGUUCCAGGGCAUUACGUCGGAUCUGUUCCCGGGUGUCACUCUACCCGAGGCGGACUACGUGGUGUUCAAUGCGUGCACAAUGUU
....((((((.......((((..((.....))...))))..(((((((((((.((.((((((..((((((......)))))).)))))))))))))))))))..)).).)))....... ( -35.00)
>DroAna_CAF1 22615 119 + 1
AAUUUACCAAAGUUCUUGAACCAGGAUAUUCCCCUCUUCCAGGGCAUAACCUCCGAUUUGUUCCCGGGCACUGUUCUGCCCGAAGCAGAUUAUGUCCUUUUCAAUCGAUGCACCCAGCA
...............(((((..(((((((..((((.....))))..........((((((((..((((((......)))))).))))))))))))))).)))))....(((.....))) ( -31.20)
>consensus
AAUUUGCCCAAGUUCCUGAACCAGGAUAUUCCACUGUUCCAGGGCAUCACCUCUGAUCUGUUUCCGGGAACCGUUCUGCCCGAAGCGGACUACGUGCUAUUCAAUAAAUGCACACAGCU
....(((((..(((....)))..(((...........))).)))))..........((((((((.(((..........)))))))))))....((((............))))...... (-19.91 = -19.97 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:11 2006