Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,483,311 – 17,483,405 |
Length | 94 |
Max. P | 0.801240 |
Location | 17,483,311 – 17,483,405 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 80.96 |
Mean single sequence MFE | -27.43 |
Consensus MFE | -19.66 |
Energy contribution | -20.58 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.25 |
Mean z-score | -1.79 |
Structure conservation index | 0.72 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.801240 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17483311 94 - 22407834 GCCGUGGUCAGGCAGUUUCAGGAGCCAAAUGUUUUCAAGGGAUUCUUCGAGUCCUGGCAAAACGAUUACGGCAAGGUAAU--CCAUAACAAAAGGG--- (((((((((.(((..........)))....(((((...(((((((...)))))))...))))))))))))))..((....--))............--- ( -31.20) >DroPse_CAF1 241 89 - 1 GCCGUGGUGCGGCAGUAUCAGGAGCCAAAUGUGUUUAAGGGCUUUUUCGAAUCCUGGCAGAAUAACUACGGAAAGGUAAG--CU-UA----GAUAU--- (((.((((((....)))))).).)).....(((((((((.(((((((((.....(((........))))))))))))...--))-))----)))))--- ( -23.50) >DroSec_CAF1 245 94 - 1 GCCGUGGUCAGGCAGUUUCAGGAGCCGAAUGUUUUCAAGGGAUUCUUCGAGUCCUGGCAGAAUGAUUACGGCAAGGUAAA--CCAUAACAAAAGGU--- ((((((((((..(.((..(((((..((((.(..((.....))..)))))..))))))).)..))))))))))..((....--))............--- ( -30.70) >DroSim_CAF1 249 94 - 1 GCCGUGGUCAGGCAGUUUCAGGAGCCGAAUGUUUUCAAGGGAUUCUUCGAGUCCUGGCAGAAUGAUUACGGCAAGGUAAA--CCAUAACAAAAGGU--- ((((((((((..(.((..(((((..((((.(..((.....))..)))))..))))))).)..))))))))))..((....--))............--- ( -30.70) >DroEre_CAF1 245 91 - 1 GCCGUGGUCAGGCAGUUUCAGGAGCCAAAUGUUUUUAAGGGAUUCUUUGAGUCCUGGCAGAACGAUUACGGCAAGGUAAAUA-----AAAAAAGGU--- (((((((((.(((..........)))....(((((...(((((((...)))))))...))))))))))))))..........-----.........--- ( -30.20) >DroAna_CAF1 233 97 - 1 GCGGUGGUCCGACAGUUUCAGGAACCUAAUGUCUUCAAGGGUUUCUUCGAGUCGUGGCAGAAUGAUUAUGGAAAGGUAAC--UAAUUAUAUUUGAAUUU .(((....)))((..((((((((((((..((....)).)))))))....((((((......)))))).)))))..))...--................. ( -18.30) >consensus GCCGUGGUCAGGCAGUUUCAGGAGCCAAAUGUUUUCAAGGGAUUCUUCGAGUCCUGGCAGAAUGAUUACGGCAAGGUAAA__CCAUAACAAAAGGU___ (((((((((.(((..........)))....(((((...(((((((...)))))))...))))))))))))))........................... (-19.66 = -20.58 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:08 2006