Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,853,373 – 1,853,478 |
Length | 105 |
Max. P | 0.644548 |
Location | 1,853,373 – 1,853,478 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 80.64 |
Mean single sequence MFE | -18.08 |
Consensus MFE | -15.46 |
Energy contribution | -16.06 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.43 |
Structure conservation index | 0.86 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644548 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1853373 105 + 22407834 UCAACUGAACCCUUCUCUCACACCACCCG----CCCUGGCACCUUCUCACCUUUUAUUUCAUUUCUUCGAAUCCUGUCUCGCAGGAUUCGCCGGCGAGCUGUGCAACUU ....................(((..(.((----((..(((...............(......).....((((((((.....))))))))))))))).)..)))...... ( -22.50) >DroSec_CAF1 21484 109 + 1 UCAACUGAACCCUUCUCACCCCCUGCCCACUGCCCCUGCCACCGUCUCACCUCUUAUUUCAUUUCUUCGCAUCCUGUCUCGCAGGAUUCGCCGGCGAGCUGUGCAACUU ...........................(((.((...((((...(.....).................((.((((((.....)))))).))..)))).)).)))...... ( -16.90) >DroSim_CAF1 21716 109 + 1 UCAACUGAACCCUUCUCACCCCCUGCCCACUGCCCCUGCCACCUUCUCACCUCUUAUUUCAUUUCUUCGCAUCCUGUCUCGCAGGAUUCGCCGGCGAGCUGUGCAACUU ................(((..(.((((....((....))............................((.((((((.....)))))).))..)))).)..)))...... ( -15.90) >DroEre_CAF1 21592 91 + 1 UCAACUGAACCCUUCCCCCA------------------UCUCGAACUCACCUUUUAUUUCAUUUCUUCGAAUCCUGUCUCGCAGGAUUCGCCGGCGAGCUGUGCAACUU ....................------------------..............................((((((((.....))))))))(((((....))).))..... ( -18.10) >DroYak_CAF1 22084 91 + 1 UCAACUGAACCCUUCCCCCA------------------AUUGCUUUGCACCUUUUAUUUCAUUUCUUGGAUUCCUGUCUCGCAGGAUUCGCCGGCGAACUGUGCAACUU ....................------------------......((((((.......((((.....)))).(((((.....)))))((((....))))..))))))... ( -17.00) >consensus UCAACUGAACCCUUCUCACAC_C__CCC_____CCCUGCCACCUUCUCACCUUUUAUUUCAUUUCUUCGAAUCCUGUCUCGCAGGAUUCGCCGGCGAGCUGUGCAACUU ....................................................................((((((((.....))))))))(((((....))).))..... (-15.46 = -16.06 + 0.60)
Location | 1,853,373 – 1,853,478 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 80.64 |
Mean single sequence MFE | -27.06 |
Consensus MFE | -17.94 |
Energy contribution | -19.42 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.05 |
Mean z-score | -1.67 |
Structure conservation index | 0.66 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607124 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1853373 105 - 22407834 AAGUUGCACAGCUCGCCGGCGAAUCCUGCGAGACAGGAUUCGAAGAAAUGAAAUAAAAGGUGAGAAGGUGCCAGGG----CGGGUGGUGUGAGAGAAGGGUUCAGUUGA ...(..(((.(((((((..(((((((((.....)))))))))................(((........)))..))----))))).)))..)................. ( -36.20) >DroSec_CAF1 21484 109 - 1 AAGUUGCACAGCUCGCCGGCGAAUCCUGCGAGACAGGAUGCGAAGAAAUGAAAUAAGAGGUGAGACGGUGGCAGGGGCAGUGGGCAGGGGGUGAGAAGGGUUCAGUUGA ..((..(....((((((..((.((((((.....)))))).)).(....).........))))))...)..)).....((((((((..............))))).))). ( -26.64) >DroSim_CAF1 21716 109 - 1 AAGUUGCACAGCUCGCCGGCGAAUCCUGCGAGACAGGAUGCGAAGAAAUGAAAUAAGAGGUGAGAAGGUGGCAGGGGCAGUGGGCAGGGGGUGAGAAGGGUUCAGUUGA ..((..(....((((((..((.((((((.....)))))).)).(....).........))))))...)..)).....((((((((..............))))).))). ( -26.64) >DroEre_CAF1 21592 91 - 1 AAGUUGCACAGCUCGCCGGCGAAUCCUGCGAGACAGGAUUCGAAGAAAUGAAAUAAAAGGUGAGUUCGAGA------------------UGGGGGAAGGGUUCAGUUGA ..........(((((((..(((((((((.....))))))))).(....).........)))))))((((..------------------((((.......)))).)))) ( -23.90) >DroYak_CAF1 22084 91 - 1 AAGUUGCACAGUUCGCCGGCGAAUCCUGCGAGACAGGAAUCCAAGAAAUGAAAUAAAAGGUGCAAAGCAAU------------------UGGGGGAAGGGUUCAGUUGA ...((((((..((((....))))(((((.....))))).....................))))))..((((------------------((((.......)))))))). ( -21.90) >consensus AAGUUGCACAGCUCGCCGGCGAAUCCUGCGAGACAGGAUUCGAAGAAAUGAAAUAAAAGGUGAGAAGGUGGCAGGG_____GGG__G_GUGGGAGAAGGGUUCAGUUGA ......(((..((((((..(((((((((.....))))))))).(....).........))))))...)))....................................... (-17.94 = -19.42 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:23 2006