Locus 6278

Sequence ID 2L_DroMel_CAF1
Location 17,466,981 – 17,467,080
Length 99
Max. P 0.872337
window10030

overview

Window 0

Location 17,466,981 – 17,467,080
Length 99
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 84.03
Mean single sequence MFE -15.87
Consensus MFE -11.28
Energy contribution -10.76
Covariance contribution -0.52
Combinations/Pair 1.24
Mean z-score -2.16
Structure conservation index 0.71
SVM decision value 0.88
SVM RNA-class probability 0.872337
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17466981 99 - 22407834
CAC---AUCCAACUCCUCCUUUUCUUCUUACCACCAACCUUCCUUUCCAAUUAGUCCUCGUCAUCGCCUGGCAUUUCCUCUGGAAUUUUCACAGGCCGUGGA
...---........................((((........((........))...........(((((....((((...))))......))))).)))). ( -14.40)
>DroSec_CAF1 9712 99 - 1
CAC---AUCCAACUCCUCCUUUUCUUUUAACCACCACCCUUCCUUUCCAAUUAGUCCUCGCCAUCGCCUGGCAUUUCCUCUGGAAUUUCCGCAGGCCGUGGA
...---...........................((((......................((((.....))))....(((.(((.....))).)))..)))). ( -16.60)
>DroSim_CAF1 10885 99 - 1
CAC---AUCCAACUCCUCCUUUUCUUUUAACCAGCACCCUUCCUUUCCAAUUAGUCCUCGCCAUCGCCUGGCAUUUCCUCUGGAAUUUCCGCAGACCGUGGA
...---........................((((........((........)).....((((.....)))).......))))....(((((.....))))) ( -13.90)
>DroEre_CAF1 10470 96 - 1
CACUCCAUCCAUCUCCCCGUUCCUUU------GCCACCCUUCCUUUCCAAUUAGUCCUUGCCAUCGCCUAGCACUUCCUUUGGAAUUUCCACAGGCCGUGGA
....................(((...------(((.........((((((..(((.((.((....))..)).)))....))))))........)))...))) ( -15.73)
>DroYak_CAF1 9646 93 - 1
CUCUC---CCAUCGCAUCGUUUUUUU------ACCACCCUUCCUUUCCAAUUAGUCCUCGCCUUCGCCUGGCAUUUCCUCUGGAAUUUCCACAGGACGUGGA
.....---..................------.((((......................(((.......)))...((((.(((.....))).)))).)))). ( -18.70)
>consensus
CAC___AUCCAACUCCUCCUUUUCUU_U_ACCACCACCCUUCCUUUCCAAUUAGUCCUCGCCAUCGCCUGGCAUUUCCUCUGGAAUUUCCACAGGCCGUGGA
............................................(((((...(((((..((....))..)).))).....)))))..(((((.....))))) (-11.28 = -10.76 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:04 2006