| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,463,544 – 17,463,637 |
| Length | 93 |
| Max. P | 0.585004 |
| Location | 17,463,544 – 17,463,637 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 68.66 |
| Mean single sequence MFE | -24.23 |
| Consensus MFE | -10.13 |
| Energy contribution | -10.13 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.585004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17463544 93 + 22407834 CACACUAACAAGAUGCAAAG--GAAAUCUAGUUAAAAGCAAUGGCACCCGCGAGUGUGCUAACAAUAAAACUGAAUUUGGAAAAGAGGUUU-------------------------UUUA .....((((.((((......--...)))).)))).......((((((.(....).)))))).....((((((...(((....))).)))))-------------------------)... ( -16.90) >DroSec_CAF1 6168 92 + 1 CGCACUAACAAGAUGCAAA---AAAAUCUAGUUAAAAGCAAUCGCACCCGCGAGUGUGCUAACAAUGAAACUAAAUUUCGAAACGAGGUUU-------------------------UUUA .(((((....)).))).((---(((((((.(((...((((.((((....))))...)))).....(((((.....))))).))).))))))-------------------------))). ( -21.80) >DroSim_CAF1 7329 95 + 1 CGCACUAACAAGAUGCAAAAAAAAAAUCUAGUUAAAAGCAAUCGCACCCGCGAGUGUGGUAACAAUGAAACUGAAUUUCGAAACGAGGUUU-------------------------UUUA .(((((....)).)))....(((((((((.((((...(((.((((....)))).)))..))))..(((((.....))))).....))))))-------------------------))). ( -21.40) >DroEre_CAF1 6881 118 + 1 CGCACUAACAGGAUGCAAAG--AAAAUCUAGUUAACAGCAACCGCACCCGCGAGUUUGCUAACAAUGAAGCUGGAUUUUUAAACGACGUUUAAUGCAGCACAGCCUAUGUAUAUAUUUUU .........(((.(((...(--(((((((((((...(((((((((....))).).)))))........)))))))))))).......((.....)).)))...))).............. ( -24.00) >DroYak_CAF1 5992 116 + 1 CGCACUAACAGGAUGCAAAG--AAAAUCUUGUUAAAUGCAACCGCACUCGCGAGUGUGCUAACAAUGAAACUGGAUUUUUAAACGACGUUUAAUGCCGCACGGCCCAG--AUAUUUUUUA .(((.(((((((((......--...)))))))))..)))....((((.(....).))))...........((((....((((((...)))))).(((....)))))))--.......... ( -30.60) >DroAna_CAF1 6208 113 + 1 CGCACUAAAAGGAUACCACGG-GUAAUCCUAUUAUACUUAACCGCCCCUGUGAGUGUCCUAACAAAGGAUGUGCAUUGCGAGCGGGCCUUGAU-----CACA-UGUGCGUAGUUGCUUUU (((((....((((((((((((-(.......................)))))).)))))))....((((.(.(((.......))).)))))...-----....-.)))))........... ( -30.70) >consensus CGCACUAACAAGAUGCAAAG__AAAAUCUAGUUAAAAGCAACCGCACCCGCGAGUGUGCUAACAAUGAAACUGAAUUUCGAAACGACGUUU_________________________UUUA (((((((((.((((...........)))).))).........(((....))))))))).............................................................. (-10.13 = -10.13 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:01 2006