Locus 6275

Sequence ID 2L_DroMel_CAF1
Location 17,460,328 – 17,460,448
Length 120
Max. P 0.542802
window10026

overview

Window 6

Location 17,460,328 – 17,460,448
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.11
Mean single sequence MFE -40.37
Consensus MFE -26.15
Energy contribution -26.60
Covariance contribution 0.45
Combinations/Pair 1.40
Mean z-score -1.65
Structure conservation index 0.65
SVM decision value 0.02
SVM RNA-class probability 0.542802
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17460328 120 + 22407834
CAACUCAUGGCGCAGUUGCUUAAGCUCGUUCUCCAGAUCAAAUAUCUGGAGGUUGAGCGAUGUCUCCCUAGCUGCGGAUUCGUUCAGCAGAGCGUCCUCCUGCUCGAUGCCCGUCUUGUU
.(((..((((.(((..((((...(((((..((((((((.....))))))))..)))))((((..((((.....).)))..)))).))))(((((......)))))..)))))))...))) ( -43.00)
>DroVir_CAF1 2698 120 + 1
CAGCUCAUGACGCAGCUGCUUAAUCUCAUUCUCCAGAUCAAGUAUUUGCAAAUUGAGCGAUGUUUCGCGAGCGGCUGACUCAUUCAGCAGCGUCUCCUCCUGCUCGAUGCCGGUCUUGUU
..((((.....((((.(((((.((((........)))).))))).)))).......((((....))))))))(((((...((((.(((((.(......)))))).)))).)))))..... ( -38.50)
>DroGri_CAF1 3246 120 + 1
CAGCUCAUGUCGCAGCUGCUUCGAUUCGUUCUCCAGUUCGAGUAUUUGCAGAUUGAGCGAGGUUUCGCGUGCGGCUGACUCAUUGAGCAGCGUCUCCUCCUGUUCGAUGCCCGUCUUAUU
........((((((.((((....(((((..(....)..)))))....)))).....(((......))).)))))).(((.((((((((((.(......)))))))))))...)))..... ( -38.80)
>DroWil_CAF1 2621 120 + 1
CAGCUCAUGGCGCAGCUGUUUGAUCUCAUUCUCCAGAUCAAAGAUUUGUAAAUUCAGUGAAGUCUCUCGUGCGGCAGACUCAUUGAGCAGAGCAUCCUCCUGCUCAAUGCCUGUUUUAUU
........(((((((.(.((((((((........)))))))).).))))...((((((((.((((.((....)).))))))))))))..(((((......)))))...)))......... ( -35.30)
>DroMoj_CAF1 2679 120 + 1
CAGCUCAUGGCGCAGCUGCUUGGCCUCGUUCUCCAGAUCGAGUAUCUGCAGAUUGAGCGAUGUCUCACGAGCGGCCGACUCAUUGAGCAGCGUCUCCUCCUGCUCGAUGCCGGUCUUGUU
..((((.....((((.((((((..((.(....).))..)))))).))))....((((......)))).))))(((((...((((((((((.(......))))))))))).)))))..... ( -46.50)
>DroAna_CAF1 2676 120 + 1
CAGCUCGUGGCGCAGCUGCUUGAUCUCGUUCUCCAGAUCGAAUAUCUGCAUGUUGAGGGACGUCUCCCGGGCAGCCGAUUCGUUGAGGAGGGCAUCCUCCUGCUCGAUACCCGUCUUGUU
((((...((((((((.((.(((((((.(....).))))))).)).)))).((((..((((....)))).))))))))....))))((((((....))))))((..(((....)))..)). ( -40.10)
>consensus
CAGCUCAUGGCGCAGCUGCUUGAUCUCGUUCUCCAGAUCAAAUAUCUGCAGAUUGAGCGAUGUCUCCCGAGCGGCCGACUCAUUGAGCAGCGCCUCCUCCUGCUCGAUGCCCGUCUUGUU
..............((((((((((.((((((..(((((.....)))))......)))))).)))....))))))).(((.((((((((((.(......)))))))))))...)))..... (-26.15 = -26.60 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:00 2006