| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,460,105 – 17,460,208 |
| Length | 103 |
| Max. P | 0.500000 |
| Location | 17,460,105 – 17,460,208 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.92 |
| Mean single sequence MFE | -32.10 |
| Consensus MFE | -17.47 |
| Energy contribution | -17.70 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.54 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17460105 103 + 22407834 ----------AUUCAGA-------CUGUACCUGUGAGCUGCGCAGGCUGGAGACCUGCUUUUGCAGCGAUAUGUUCUCCUCCUCCAGCUCCGAGUAUUCGCUAAGCAUACGCGUCUCCCG ----------....(((-------(.((((.((.((((((.(.(((..((((((((((....)))).)......))))).)))))))))))).)))).......((....)))))).... ( -32.10) >DroVir_CAF1 2466 112 + 1 UC-UAGAAUUCUUGAGC-------ACUUGCCUGCGAACUUCGCAGGCUGGAGACCUGCUUCUGCAACGAUAUGUUCUCCUCUUCCAGCUCAGAGUACUCACUGAGCAUGCGCGUCUCGCG ((-.((....)).))((-------....(((((((.....)))))))..(((((.(((.........((.....))..........((((((........))))))..))).))))))). ( -37.30) >DroGri_CAF1 3019 107 + 1 -C-C--AA--CUUGAGA-------ACUUACCUGAGAGCUUCUCAGGCUGGAGACCUGCUUCUGCAGCGAUAUGUUCUCCUCCUCCAGUUCGGAGUAUUCGCUGAGCAUGCGUGUCUCGCG -.-(--(.--(((((((-------((((......))).)))))))).))(((((.(((.....((((((......((((...........))))...)))))).....))).)))))... ( -37.70) >DroWil_CAF1 2392 109 + 1 UCUC--AC--UUUCAAA-------ACUCACCUGAGAACUUCUCAGACUGGACACCUGUUUUUGGAGUGAUAUGUUCUCUUCCUCUAGCUCCGAGUAUUCACUGAGCAUCCGUGUCUCACG ....--..--.......-------......(((((.....)))))...((((((.......(((((.((..........)))))))((((..(((....)))))))....)))))).... ( -24.00) >DroMoj_CAF1 2449 110 + 1 UC-C--AAUUCAAAUGA-------ACUCACCUGCGAGCUUCUCAAGCUGGACACCUGCUUCUGCAACGAUAUGUUCUCCUCCUCCAGCUCUGAGUAUUCGCUGAGCAUACGCGUCUCACG ..-.--...........-------.((((...(((((...(((((((((((....(((....)))..((.....))......))))))).))))..)))))))))............... ( -26.60) >DroAna_CAF1 2446 110 + 1 ----------AGUUUGAAUAAGUAACCCACCUGUGAGCUGCGCAGGUUGGAAACCUGCUUCUGCAGCGAUAUGUUCUCCUCCUCCAGCUCGGAGUACUCACUGAGCAUUCGGGUCUCUCG ----------..........((..((((........(((((((((((.....))))))....)))))((.((((((.....((((.....))))........))))))))))))..)).. ( -34.92) >consensus _C_C__AA__CUUCAGA_______ACUCACCUGAGAGCUUCGCAGGCUGGAGACCUGCUUCUGCAGCGAUAUGUUCUCCUCCUCCAGCUCCGAGUAUUCACUGAGCAUACGCGUCUCACG ..............................(((((.....)))))((((((...((((....)))).((.....))......))))))...(((....(((.........))).)))... (-17.47 = -17.70 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:59 2006