Locus 6273

Sequence ID 2L_DroMel_CAF1
Location 17,456,934 – 17,457,042
Length 108
Max. P 0.931513
window10024

overview

Window 4

Location 17,456,934 – 17,457,042
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 65.47
Mean single sequence MFE -24.63
Consensus MFE -14.86
Energy contribution -16.00
Covariance contribution 1.14
Combinations/Pair 1.11
Mean z-score -1.63
Structure conservation index 0.60
SVM decision value 1.21
SVM RNA-class probability 0.931513
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17456934 108 + 22407834
CUUCAUCAUCUAUCUGAAUCGUCUUUGAGACGUAGCCUGGUGCUACUUU-AGGUUCAAUGGCUGCAAGCCAUGCGGGUAAUAUACAUUUCGA-----------GCAAAAAUCUGAUGACU
..((((((..(((((((((((((.....)))(((((.....)))))...-.))))).(((((.....)))))..)))))...........((-----------.......)))))))).. ( -27.70)
>DroSec_CAF1 21106 83 + 1
CUUC---AUCUGUCUGAAUCGUCUUUGAGACGUAGCCUGGUGCUACUUU-AGGUUCAAUGGCUGCAAGCCAUGCGGGUAAUAUACAU---------------------------------
....---((((((.(((((((((.....)))(((((.....)))))...-.))))))(((((.....))))))))))).........--------------------------------- ( -25.50)
>DroSim_CAF1 21366 86 + 1
CUUCAUCAUCUUUCUGAAUCGUCUUUGAGACGUAGCCUGGUGCUACUUU-AGGUUCAAUGGCUGCAAGCCAUGCGGGUAAUAUACAU---------------------------------
.......((((...(((((((((.....)))(((((.....)))))...-.))))))(((((.....)))))..)))).........--------------------------------- ( -21.70)
>DroEre_CAF1 22620 105 + 1
CUUCAUCAUCAUUCAGAAUCGUCUUUGAGACGUAGCCU-GUGCUACUCU-AGAUUCAAUGGCUGCGAGCCAUG--GCUAAUAUACAUUUCGA-----------AAAAGAAUCUGAUCUCU
............(((((.((...(((((((((((((((-(..(((...)-))...))..)))))))(((....--)))........))))))-----------)...)).)))))..... ( -27.20)
>DroYak_CAF1 24155 91 + 1
CUUCAUCAUCAUUCAGAAUCGUCUUUGAGACGUAGCCUGGUGCUACUCU-AGGUUCAAUGGCUGCAAG----------------CAUUUCGA-----------GCAAAA-ACUGAUCUCU
............((((....(((.....)))((((((..(.(((.....-.))).)...))))))..(----------------(.......-----------))....-.))))..... ( -19.50)
>DroAna_CAF1 16259 113 + 1
CAUC---UUCAUUUAGAAUCGUCUUAGAGACGUAGCCACUUGCUACACACAGACCUGAUACCUGAUUGUAUU----UAAAUAUACAUUUCAGUCCCGAUCUACCAUAGAAUCGGGCUUUG
..((---(......)))((((((.....)))(((((.....)))))..........)))..((((.(((((.----.....)))))..)))).(((((((((...))).))))))..... ( -26.20)
>consensus
CUUCAUCAUCAUUCAGAAUCGUCUUUGAGACGUAGCCUGGUGCUACUCU_AGGUUCAAUGGCUGCAAGCCAUG__GGUAAUAUACAUUUCGA_____________AA_A_UCUGAU_UCU
...............((((((((.....)))(((((.....))))).....))))).(((((.....)))))................................................ (-14.86 = -16.00 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:58 2006