Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,449,931 – 17,450,048 |
Length | 117 |
Max. P | 0.514235 |
Location | 17,449,931 – 17,450,048 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 76.58 |
Mean single sequence MFE | -29.26 |
Consensus MFE | -14.94 |
Energy contribution | -13.69 |
Covariance contribution | -1.24 |
Combinations/Pair | 1.44 |
Mean z-score | -1.72 |
Structure conservation index | 0.51 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514235 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17449931 117 - 22407834 UAAAUGCACACCUCCUUUUUGUGCAGUACACGCUGGUACCAUUCCCGCACCUGGCGGUACUUGUUAUCUCUGCCCUCCGCCAGUAUCACUUCCUGGAUUAGCUGGUCCUUUUCCGCC ....((((((.........))))))...((.((((((.(((.........(((((((.....((.......))...)))))))..........)))))))))))............. ( -27.91) >DroSec_CAF1 14089 117 - 1 GAAAUGCACUGAUCCUUUUCGUGCAGCAUAUGCUGGUACCAUUCCCUCACCUGGCGGUACUUGUUAUCUCUGCUCUCCGCCAGUAUCACUUCCUGGGUGAGCUGGUUCUUUUCCGUC (((((((((.((......)))))))(((...((.((((((....((......)).)))))).))......))).....((((((.(((((.....)))))))))))...)))).... ( -31.80) >DroSim_CAF1 14297 117 - 1 GAAAUGCACUGAUCCUUUUCGUGCAGCAUAUGCUGGUACCAUUCCCUCACCUGGCGGUACUUGUUAUCUCUGCUCUCCGCCAGUAUCACUUCCUGGAUGAGCUGGUUCUUUUCCCCC ((((.((.((.((((.....(((((((....))))...............(((((((.....((.......))...)))))))...))).....)))).))...))...)))).... ( -29.20) >DroEre_CAF1 14233 117 - 1 UGAAUGCGUUCAUUCUUUUUAUCCAGUUGAUGCUGGUACCAGUCCCUCACCUGGCGGUACUUGUCAUCUCUGCUCUCCGCCAGCACCACUUCCUGGAUGAGCUCCUCCUUUUCCGCC .(((((....)))))..(((((((((.(((.((((....))))...))).(((((((.....((.......))...))))))).........)))))))))................ ( -29.60) >DroYak_CAF1 14826 117 - 1 UGAAUGCACUCCUUCUUUUCAUCCAGUUGAUGCUGGUACCAGUCCCUUACCUGGCGGUACUUGGCUUCUCUGCUCUCCGCCAGCACCACUUCCUGGAUGAGCUGCUCCUUUUCCUCC .....((((((...........(((((....)))))..((((........(((((((.....(((......)))..))))))).........))))..))).)))............ ( -32.23) >DroAna_CAF1 13098 117 - 1 CGAAUUAGUUCGUCCUUGCGGGCCAUUUCCCGCUGAUACCACUCCUGCGCCUUCUUGGUCUUGGCCUCCUUGCCCUCCAUGAUGACCACCUCGCUGAUCAGCUGCUCAUUCUCGCUC .((((.(((..((((....))))........((((((.........(((......(((((..(((......)))(.....)..)))))...)))..)))))).))).))))...... ( -24.80) >consensus UAAAUGCACUCAUCCUUUUCGUCCAGUACAUGCUGGUACCAUUCCCUCACCUGGCGGUACUUGUCAUCUCUGCUCUCCGCCAGUACCACUUCCUGGAUGAGCUGCUCCUUUUCCGCC ....(((................((((....))))................((((((...................))))))))).........(((..((......))..)))... (-14.94 = -13.69 + -1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:55 2006