| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,449,279 – 17,449,390 |
| Length | 111 |
| Max. P | 0.760625 |
| Location | 17,449,279 – 17,449,390 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 76.66 |
| Mean single sequence MFE | -31.60 |
| Consensus MFE | -20.21 |
| Energy contribution | -20.52 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.760625 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17449279 111 - 22407834 AUUGUUAAAACCAUCA---AUACUAACGCUAUCCUGGAGGUGUUGCACCAUCUCUUUGAGUUCACGAACCUCCUUUCGGCGUUGGCGCCACGAGUGCAACACCACCAUGGUGAA ................---.......(((((...(((.(((((((((((........(((((....)).))).....((((....))))..).)))))))))).)))))))).. ( -34.70) >DroSec_CAF1 13506 95 - 1 -------------------AUACUAACGCUAUCCUGGAGGUGUUGCACCAUCUCUUUGAGUUCACGAACCUCCUUUCGGCGUUGGCGCCACGAGUGCAACACCACCAUGGUGAA -------------------.......(((((...(((.(((((((((((........(((((....)).))).....((((....))))..).)))))))))).)))))))).. ( -34.70) >DroSim_CAF1 13710 95 - 1 -------------------AUACUAACGCUAUCCUGGAGGUGUUGCACCAUCUCUUUGAGUUCACGAACCUCCUUUCGGCGUUGGCGCCACGAGUGCAGCACCACCAUGGUGAA -------------------.......(((((...(((.(((((((((((........(((((....)).))).....((((....))))..).)))))))))).)))))))).. ( -34.70) >DroEre_CAF1 13596 111 - 1 AUUGAUAAAACCGCCA---AUACUAACGUUAUCCUGAAGGCGUUGCACCACCUCUUGGAGUUCACGAACCUCCUUUCGCCGUUGGCGCCACGAGUGCAACAUUACCAUGGUGAA ...........(((((---.............((....)).((((((((.......((((((....)).))))...((((...))))....).))))))).......))))).. ( -26.20) >DroYak_CAF1 14211 111 - 1 AUUGAUAAAACCGUCA---AUACUAACGUUAUCCUGAAGGCGUUGCACCAUAUCUUGGAGUUCACGAACCUCCUUUCGCCGUUGGCGCCACGAGUGCAACAUUACUAUGGUGAA ((((((......))))---))..(((((((........)))))))(((((((....((((((....)).)))).......((((.(((.....))))))).....))))))).. ( -26.50) >DroMoj_CAF1 22550 109 - 1 --GUA---UUCCUUAUCAGAUACUCACGUUCUUUUGGAGACGUUCCACCGCCUGCUGCAAUUUGCGGACAUCGGCGCGGCGUUGGCGCCAUGCGUGCAGCAUGACCGAGGUGAG --(((---((........)))))..(((((........)))))..((((.(.(((((((....((.(....).))((((((....))))..)).))))))).).....)))).. ( -32.80) >consensus __UGA___AACC_UCA___AUACUAACGCUAUCCUGGAGGCGUUGCACCAUCUCUUGGAGUUCACGAACCUCCUUUCGGCGUUGGCGCCACGAGUGCAACACCACCAUGGUGAA .............................((((.(((.((.((((((((................(((......)))((((....))))..).))))))).)).))).)))).. (-20.21 = -20.52 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:54 2006