Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,434,860 – 17,434,954 |
Length | 94 |
Max. P | 0.576450 |
Location | 17,434,860 – 17,434,954 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 84.11 |
Mean single sequence MFE | -18.75 |
Consensus MFE | -13.51 |
Energy contribution | -13.23 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.23 |
Mean z-score | -1.98 |
Structure conservation index | 0.72 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576450 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17434860 94 - 22407834 GUCAAAU------AGCAUCAUAUAUAUUUGAUGU---UUUCUUCGGUAUACCAAAGACU--ACUUAACAAAUCAUCGCCCCCGAUGACGUAUUACUCGAAUAGAC (((....------(((((((........))))))---)...((((((((((..(((...--.)))......((((((....)))))).))).))).))))..))) ( -19.00) >DroSec_CAF1 23165 95 - 1 GUCAAAU------AGCAUCAUAUAUAUUUGAUGUG--UUUUUUCGGUAUACCAAAGACU--ACUUAACAAAUCAUCGGCCCCGAUGACGUAUUACUCGAAUAGAC .......------.((((((........))))))(--(((.((((((((((..(((...--.)))......((((((....)))))).))).))).)))).)))) ( -21.80) >DroSim_CAF1 24745 94 - 1 GUCAAAU------AGCAUCAUAUAUAUUUGAUGU---UUUUUUCGGUAUACCAAAGACU--ACUUAACAAAUCAUCGGCCCCGAUGACGUAUUACUCGAAUAGAC (((....------(((((((........))))))---)...((((((((((..(((...--.)))......((((((....)))))).))).))).))))..))) ( -21.30) >DroEre_CAF1 22682 95 - 1 GUCAAAUCCUCAAAUCAUCAU--AUAUUUGAUGU---U---UUCGGUAUACCAAAGACU--ACUUAACAAAUCAUCGCCUCUGAUGACGUAUUACUCGAAUAGAC (((............(((((.--.....))))).---.---((((((((((..(((...--.)))......((((((....)))))).))).))).))))..))) ( -15.60) >DroYak_CAF1 23188 89 - 1 GUCAA--------AUCAUCAU--AUAUUUGAUGU---UUU-UUUGGUAUACCAAAGACU--ACUUAACAAAUCAUCGCCUCAGAUGACGUAUUACUUGAAUAGAC (((..--------..(((((.--.....))))).---...-(((((....)))))))).--..........(((((......))))).................. ( -16.30) >DroAna_CAF1 24598 93 - 1 GUCAAAU------AGUGU---UCGUAUUUGACGUAUUUUUUUUCGGUAUAC-AAAGACUUAAUUGAACUAGUCAUCGC--CCGAUGAUGUAUUAAUCGAAUAGAC (((((((------(....---...)))))))).....(((.((((((((((-.....(......).....((((((..--..))))))))))..)))))).))). ( -18.50) >consensus GUCAAAU______AGCAUCAUAUAUAUUUGAUGU___UUUUUUCGGUAUACCAAAGACU__ACUUAACAAAUCAUCGCCCCCGAUGACGUAUUACUCGAAUAGAC (((............(((((........)))))........(((((.((((..(((......)))......((((((....)))))).))))...)))))..))) (-13.51 = -13.23 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:50 2006