Locus 6267

Sequence ID 2L_DroMel_CAF1
Location 17,431,377 – 17,431,473
Length 96
Max. P 0.945802
window10015

overview

Window 5

Location 17,431,377 – 17,431,473
Length 96
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 76.89
Mean single sequence MFE -26.38
Consensus MFE -15.02
Energy contribution -15.88
Covariance contribution 0.86
Combinations/Pair 1.37
Mean z-score -2.20
Structure conservation index 0.57
SVM decision value 1.36
SVM RNA-class probability 0.945802
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17431377 96 + 22407834
CCCAAAGUCAGGCCUAUCAGCAUGCCACCUAUCGCAUGCUGCACUUUGUAGCCCACUAUAUGCUACCAGGUACUCCGCCUCCAGGAC---------CUUCGCUU---C
....((((.((((((..((((((((........)))))))).((((.(((((.........))))).))))...........))).)---------))..))))---. ( -28.10)
>DroVir_CAF1 19900 105 + 1
CCCAGAGCCAGGCCUAUCAACAUGCCACCUAUCGCCUCAUGCACUUUGUCGCCUACUGCAUGCUACCCGGCACGCCCCCGCCAGCUCUGCCCAUGUCAUCUCUG---C
..((((((.((((....(((..(((...............)))..)))..))))...((.((((....)))).))........))))))...............---. ( -21.76)
>DroEre_CAF1 19243 96 + 1
CCCAAAGUCAGGCCUAUCAGCAUGCCACCUAUCGCAUGCUGCACUUUGUAGCCCACUACAUGCUACCAGGUACUCCGCCACCUGGAC---------CUUCGCUU---C
....((((.(((......(((((((........)))))))(((...(((((....))))))))..((((((........)))))).)---------))..))))---. ( -28.30)
>DroYak_CAF1 19816 96 + 1
CCCAAAGUCAGGCCUAUCAGCAUGCCACCUAUCGCAUGCUGCACUUCGUAGCCCACUAUAUGCUACCAGGUACACCGCCACCUGGAC---------CUUCGCUU---C
....((((.(((((...((((((((........)))))))).((((.(((((.........))))).))))............)).)---------))..))))---. ( -26.70)
>DroMoj_CAF1 20796 105 + 1
CCCAGAGCCAGGUCUAUCAACAGGCCACCUUUCGACUGAUGCACCUCGUCGCCUACUGCAUGCUGCCCGGCACGCCUCCCCCUGCUCUGCCCAUGGCUUCCAUU---C
..((((((..(((((......)))))......((((.((......))))))......((.((((....)))).))........))))))...((((...)))).---. ( -25.20)
>DroAna_CAF1 21373 99 + 1
CCCAGAGCCAGGUGUACCAGCAUGCCACCUACCGCAUGCUGCACUUCGUGGCCCACUACAUGUUGCCGGGCACCCCGCCACCUCCAC---------CGCCGAUUAUCC
....(.((..((((...((((((((........))))))))......(((((..((.....))....(((...))))))))...)))---------))))........ ( -28.20)
>consensus
CCCAAAGCCAGGCCUAUCAGCAUGCCACCUAUCGCAUGCUGCACUUCGUAGCCCACUACAUGCUACCAGGCACGCCGCCACCUGCAC_________CUUCGCUU___C
..........(((....((((((((........))))))))..(((.(((((.........))))).)))......)))............................. (-15.02 = -15.88 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:49 2006