Locus 6266

Sequence ID 2L_DroMel_CAF1
Location 17,416,587 – 17,416,682
Length 95
Max. P 0.836024
window10014

overview

Window 4

Location 17,416,587 – 17,416,682
Length 95
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 67.08
Mean single sequence MFE -26.10
Consensus MFE -9.97
Energy contribution -9.05
Covariance contribution -0.92
Combinations/Pair 1.50
Mean z-score -1.97
Structure conservation index 0.38
SVM decision value 0.73
SVM RNA-class probability 0.836024
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17416587 95 + 22407834
CUUGGUGAUAAUCA-----ACAAAAGGUGUUACUGG-AAAUCUCUCAGUAUACCUUUGGGUUGCUUAUUGGUGAUAA-CCCUAUCAAAAGG--------UAUA--CAAGUUU
((((..(((((.((-----((.((((((((.(((((-(....)).))))))))))))..)))).)))))..(((((.-...))))).....--------....--))))... ( -25.60)
>DroSec_CAF1 4867 105 + 1
CUUGGUGAUAAUCU-----ACAAAAGUUGUUACUGU-GAAUCUCUCAGUUUACCUUUGGGUUGUUUAUUGGUGAUAG-GGUUAUCAAUAUUAUUACCUAUAUACCUAAGUUU
...(((((((((..-----......)))))))))((-((((......)))))).(((((((....(((.((((((((-.((.....)).)))))))).))).)))))))... ( -22.20)
>DroSim_CAF1 4828 105 + 1
CUUGGUGAUAAUCU-----ACUAAAGGUGUUACUGG-GAAUCUCUCAGUUUACCUUUGGGUUGCUUAUUGGUGAUAG-GGUUAUCAAUAGUAUUACCUAUAUAACUAAGUUU
((((((((((((((-----.(((((((((..(((((-(.....)))))).)))))))))((..((....))..)).)-))))))).((((......))))...))))))... ( -36.00)
>DroEre_CAF1 4795 94 + 1
-UUGGUAAUAAUCU-----ACUAAAGGUGGCAGUGGGGAAUCUCUCAGUAUUACUUUGGGUUUA-UUUUGGUGAUAG-GGUUAUCAAUAGG--------UAUA--CACGUCU
-...(((...((((-----(((.(((((((.(.(((((....))))).).))))))).))....-..((((((((..-.))))))))))))--------).))--)...... ( -16.40)
>DroAna_CAF1 7403 95 + 1
UUCGGUGAUAAUCGGAGCAAGAAUGGGUGUUGCCGGGGAAUCUCUCGGCAUGACUCCGAAGGUCGUAAAGGUGAUGGGGGUUAUCGGCUG-----------------CGAAG
((((..(((..((((((((...........((((((((....)))))))))).))))))..)))((...((((((....)))))).))..-----------------)))). ( -30.30)
>consensus
CUUGGUGAUAAUCU_____ACAAAAGGUGUUACUGG_GAAUCUCUCAGUAUACCUUUGGGUUGCUUAUUGGUGAUAG_GGUUAUCAAUAGG________UAUA__CAAGUUU
.((((((((..................(((((((.........(((((.......))))).........)))))))...))))))))......................... ( -9.97 =  -9.05 +  -0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:48 2006