Locus 6265

Sequence ID 2L_DroMel_CAF1
Location 17,409,946 – 17,410,040
Length 94
Max. P 0.694727
window10013

overview

Window 3

Location 17,409,946 – 17,410,040
Length 94
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 88.32
Mean single sequence MFE -27.40
Consensus MFE -20.89
Energy contribution -21.45
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.68
Structure conservation index 0.76
SVM decision value 0.34
SVM RNA-class probability 0.694727
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17409946 94 + 22407834
ACGAAGGCGAUGCGAAAUUCCCAUUAAAUGUGAAGUUUGUGGCAUCUGGCAAAUAA------AGAUGAGUUUGAUUUUGCCCCAUUUGCAUCGGCGGAAU
.....(.(((((((((....((((.((((.....)))))))).....((((((...------(((....)))...))))))...))))))))).)..... ( -24.80)
>DroSec_CAF1 3218 100 + 1
ACUGAGGCGAUGCGAAAUUCCCAUUAAAUGCGAAAUUUGUGGCAUCUGGCAAAUAAAGAUAAAGAUGCGUUUGAUUUUGCCCGAGUUGCAUCGGCGGAAU
.....(.((((((((.....((((.((((.....))))))))..((.((((((...((((........))))...)))))).)).)))))))).)..... ( -27.00)
>DroSim_CAF1 3218 94 + 1
AUUGAGGCGAUGCGAAAUUCCCAUUAAAUGCGAAGUUUGUGGCAUCUGGCAAAUAA------AGAUGCGUUUGAUUUUGCCCGAGUUGCAUCGGCGGAAU
.....(.((((((((..............((((((((....((((((.........------))))))....)))))))).....)))))))).)..... ( -26.41)
>DroEre_CAF1 3268 94 + 1
AACGAGGCGAUGCGAAAUUCCCAUUAAAUGGGAAGUUUGUAGCAUCUGGCAAAUAU------AGAUGAUUUUGCUUCUGCCCGAUUUGCAUCGGCGGUAU
...(((((((((((((.(((((((...))))))).)))))).((((((.......)------)))))...)))))))((((.(((....))))))).... ( -31.40)
>consensus
ACUGAGGCGAUGCGAAAUUCCCAUUAAAUGCGAAGUUUGUGGCAUCUGGCAAAUAA______AGAUGAGUUUGAUUUUGCCCGAGUUGCAUCGGCGGAAU
.....(.((((((((.....((((.((((.....))))))))..((.((((((......................)))))).)).)))))))).)..... (-20.89 = -21.45 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:47 2006