Locus 6264

Sequence ID 2L_DroMel_CAF1
Location 17,404,505 – 17,404,611
Length 106
Max. P 0.961144
window10012

overview

Window 2

Location 17,404,505 – 17,404,611
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 78.81
Mean single sequence MFE -37.80
Consensus MFE -23.10
Energy contribution -23.33
Covariance contribution 0.23
Combinations/Pair 1.38
Mean z-score -2.54
Structure conservation index 0.61
SVM decision value 1.52
SVM RNA-class probability 0.961144
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17404505 106 - 22407834
CAUCGUUGGCUUGACGGAGUGCGGUCUCCAGUUCCGCAACUCUAUUUUGUAGCUGUUCCAGCAGCGCGGAUUUAACGGAAGCCGCAUCAUCCAUCUCAUCAAUGAC
..(((((((...((.(((((((((..(((.(((((((.((........)).(((((....))))))))))....)))))..))))))..))).))...))))))). ( -41.90)
>DroVir_CAF1 27051 106 - 1
AUUCCUUGGCCUCAUGCAGUGCCAUCUCCAGUUCGUGGACGCGACUCUGCAGCUGUUCCAGCCGCGCGGACUUGUCGCUGGAAGCCUCGUCCAUUUCGUCGAUGAC
......((((((.....)).))))........((((.(((((((((((((.((((...))))...)))))...)))))((((.......))))....))).)))). ( -32.70)
>DroSim_CAF1 24157 106 - 1
CAUCGUUGGCUUGACGGAGUGCGGCCUCCAGUUCCGCAACUCUUUUUUGUAGCUGUUCCAGCAGCGUGGAUUUAACGGAAGCCGCAUCAUCCAUCUCAUCAAUGAC
..(((((((...((.((((((((((.(((.(((((((.((........)).(((((....))))))))))....))))).)))))))..))).))...))))))). ( -41.10)
>DroEre_CAF1 28677 106 - 1
CCUCGUUGGCCUGAUGAAGUGCGGCCUCCAGUUCCACAACUCUAUUUUGAAGCUGUUCCAGCAGCUUGGCCUUAACGGAGGCCGCAUCGUCCAUUUCGUCGAUGAC
..((((((((..((((..(((((((((((((((....))))........(((((((....))))))).........)))))))))))....))))..)))))))). ( -44.20)
>DroYak_CAF1 26939 106 - 1
ACUCGUUGGCUUGAUGAAGUGCGGCCUCCAGUUCCACAACUCUACUUUGAAGCUGUUCCAGCAGCUUAGCCUUAGCGGAGGAAGCAUCAUCCAUUUCGUCGAUGAC
..((((((((..((((..((((..(((((....................(((((((....))))))).((....)))))))..))))....))))..)))))))). ( -36.90)
>DroAna_CAF1 21120 106 - 1
CUUCGUUGGCCAAGUGAAGGGCAGCCUCCAGCUCAACGACCCGCUUUUGAAGCUGUUCCAGCAGCUUGGACUUCAUGGAGGCCGUUUCAUCCAUUUCAUCUAUGAC
..((((.((..(((((..((((.(((((((((..........))..((.(((((((....))))))).)).....))))))).))))....)))))..)).)))). ( -30.00)
>consensus
CAUCGUUGGCCUGAUGAAGUGCGGCCUCCAGUUCCACAACUCUAUUUUGAAGCUGUUCCAGCAGCGUGGACUUAACGGAGGCCGCAUCAUCCAUUUCAUCGAUGAC
..(((((((...((((..((((.((((((.(((....))).....(((((.(((((....))))))))))......)))))).))))....))))...))))))). (-23.10 = -23.33 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:46 2006