| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,391,087 – 17,391,180 |
| Length | 93 |
| Max. P | 0.543087 |
| Location | 17,391,087 – 17,391,180 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 89.13 |
| Mean single sequence MFE | -23.85 |
| Consensus MFE | -17.41 |
| Energy contribution | -17.73 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.543087 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17391087 93 - 22407834 UUACGGUUGACGGUUUGAUAUGUCUUUGAUUGGUAAAUAGAUACUAUCUGUGAGCUGUCAGAGAUCGUGAGACUUGACUUGACAUUUUCACUA .....((..(.(((((.((..(((((((((.(((..((((((...))))))..)))))))))))).)).)))))....)..)).......... ( -20.70) >DroSec_CAF1 9478 91 - 1 UUACGGUUGAC--UUUGAUGGGUCUUUGAUUGGUAAAUAGAUACUAUCUGUGAGCUGUCGGAGAUCGUGAGACUUGACUUGACAUUUUCACAA ........(((--((((((((.((...(((.((((......)))))))...)).))))))))).))((((((..((......)).)))))).. ( -23.00) >DroSim_CAF1 12546 91 - 1 UUACUAUUGAC--UUUGAUGGGUCUUUGAGUGGUAAAUAGAUACUAUCUGUGAGCUGUCGGAGAUCGUGAGACUUGACUUGACAUUUUCACUA ........(((--((((((((.((...((.(((((......)))))))...)).))))))))).))((((((..((......)).)))))).. ( -22.50) >DroEre_CAF1 15068 91 - 1 UUAGGGUUGAU--UUCGAUGGGUCCCUGAUUGGUAAAUAGAUACCAUCUGGGAACUGUCGUAGAUCGUGAGACUUGACUUGACAUUUUUCCUA .(((((..(((--.((((.((.((((.(((.((((......))))))).)))).))((((.((.((....)))))))))))).)))..))))) ( -29.20) >consensus UUACGGUUGAC__UUUGAUGGGUCUUUGAUUGGUAAAUAGAUACUAUCUGUGAGCUGUCGGAGAUCGUGAGACUUGACUUGACAUUUUCACUA .....(((((....))))).(((((((((.((((..((((((...))))))..)))))))))))))((((((..((......)).)))))).. (-17.41 = -17.73 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:37 2006