Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,839,500 – 1,839,613 |
Length | 113 |
Max. P | 0.599032 |
Location | 1,839,500 – 1,839,613 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 84.27 |
Mean single sequence MFE | -17.22 |
Consensus MFE | -12.02 |
Energy contribution | -12.30 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.14 |
Mean z-score | -2.32 |
Structure conservation index | 0.70 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599032 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1839500 113 - 22407834 UAAAUCAAACAUUUCACUUGGCGCGGCCCAAAAAUAAACAGAAAACAGCAACAACAGCAGGGCAUCAACAAAAAUAUUGUAGAAAUGCUGGAAUAAUAAAAGUGAAAAUGAAA .........(((((((((((((...))).................(((((......((...)).((.((((.....)))).))..))))).........))))).)))))... ( -19.10) >DroSec_CAF1 7664 113 - 1 UAAAUCAAACAUUUCACUUGGCGCGGCCCGAAAAUAAACAGAAAACAGCAACAACAGCACGGCAUCAACAAAAAUAUUGUAGAAAUGCUGGAAUAAUAAAAGUGAAAAUGAAA .........(((((((((((((...))).................(((((......((...)).((.((((.....)))).))..))))).........))))).)))))... ( -19.10) >DroEre_CAF1 7915 111 - 1 UAAAUCAAACAUUUCACUUGGCGCGGCCCGAAAAUAAAU--AAAACAGCAACAACAGCGGGGCAUCAACAAAAAUAUUGUAGAAAUGCUGGAAUAAUAAAAGUGAAAAUGAAA .........(((((((((((((...)))...........--....(((((......((...)).((.((((.....)))).))..))))).........))))).)))))... ( -19.10) >DroWil_CAF1 12254 93 - 1 UAAAUCAAACAUUUUACUUGGCGCAGCCCA--AAUAAACAGA------------------GGCAUAAACAAAAAUAUUGUAGAGAUGUUGCAAUAAUAAAAGUGAAAAUGAAA .........((((((((((......((((.--........).------------------)))...........((((((((.....))))))))....))))).)))))... ( -14.20) >DroYak_CAF1 7983 111 - 1 UAAAUCAAACAUUUCACUUGGCGUGGCCCAAAAAUAAAU--AAAACAGCAACAACAGCAGGGCAUCAACAAAAAUAUUGUAGAAAUGCUGGAAUAAUAAAAGUGAAAAUGAAA .........(((((((((((((...)))...........--....(((((......((...)).((.((((.....)))).))..))))).........))))).)))))... ( -19.10) >DroAna_CAF1 8284 95 - 1 UAAAUCAAAUAUUUCACUUGGCGCAGCCCUAAAGUAAACAAACAA------------------AGCAACAAAAAUAUUGUAGAAAUGUUGGAAUAAUAAAAGUGAAAAUGAAA ...........(((((((((((...)))............((((.------------------..(.((((.....)))).)...))))..........))))))))...... ( -12.70) >consensus UAAAUCAAACAUUUCACUUGGCGCGGCCCAAAAAUAAACAGAAAACAGCAACAACAGCAGGGCAUCAACAAAAAUAUUGUAGAAAUGCUGGAAUAAUAAAAGUGAAAAUGAAA .........(((((((((((((...)))................................(((((..((((.....))))....)))))..........))))).)))))... (-12.02 = -12.30 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:18 2006