Locus 6256

Sequence ID 2L_DroMel_CAF1
Location 17,372,346 – 17,372,438
Length 92
Max. P 0.612791
window9995

overview

Window 5

Location 17,372,346 – 17,372,438
Length 92
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 88.85
Mean single sequence MFE -15.27
Consensus MFE -13.41
Energy contribution -13.30
Covariance contribution -0.11
Combinations/Pair 1.09
Mean z-score -1.68
Structure conservation index 0.88
SVM decision value 0.16
SVM RNA-class probability 0.612791
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17372346 92 - 22407834
UAUGUUAUAGUUUUUAAUUUAGUGCUGCAAAUCUACGUUGUUUUCUUAAUCGAGAAUCUGCAUUAAAUCAUUUAGAAGACACACAUAAUUUA
(((((.....(((((((((((((((......(((.(((((......))).)))))....)))))))))....))))))....)))))..... ( -13.60)
>DroSec_CAF1 8341 85 - 1
UGUGUUAUAGUUUUUAAUUUAGUGCUGCAAAUCUACGUUGUUUUCUUAAUCGAAAAUCAGCAUUAAAUCUUUUAAAAGACACACC-------
((((((..........(((((((((((............((((((......))))))))))))))))).........))))))..------- ( -17.61)
>DroSim_CAF1 8564 85 - 1
UAUGUUAUAGUUUUUAAUUUAGUGCUGCAAAUCUACAUUGUUUUCUUAUUCGAGAAUCAGCAUUAAAUCUUUUAAAAGACACACC-------
.........((((((.(((((((((((............((((((......)))))))))))))))))......)))))).....------- ( -14.60)
>consensus
UAUGUUAUAGUUUUUAAUUUAGUGCUGCAAAUCUACGUUGUUUUCUUAAUCGAGAAUCAGCAUUAAAUCUUUUAAAAGACACACC_______
.........((((((.(((((((((((............((((((......)))))))))))))))))......))))))............ (-13.41 = -13.30 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:30 2006