| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,367,703 – 17,367,801 |
| Length | 98 |
| Max. P | 0.905432 |
| Location | 17,367,703 – 17,367,801 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 76.93 |
| Mean single sequence MFE | -23.99 |
| Consensus MFE | -17.85 |
| Energy contribution | -17.80 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.905432 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17367703 98 - 22407834 CCCA---AGAAUACAA-----------ACAAGAAACUGAUGCA------UCUGUUAUUGGUGUUGGUUGCAGGAGUUGAUUUGCUCCUGCGAAGAUGUUGUGCCACAAAUUGAACCGC ..((---(........-----------((((.(((((...(((------((.......))))).))))((((((((......)))))))).....).))))........)))...... ( -24.69) >DroPse_CAF1 4073 96 - 1 AAC-------AAAAAA-----------ACAAAAAACUGAUGCAUAAAACUCUGUUAUUGGUGUUGGUUGCAGGAGUUGAUUUGCUCCUGCGAAGAUGUUGUGCCACAAAUUGAA---- .((-------((....-----------.(((...((..(((((........)).)))..)).))).((((((((((......)))))))))).....)))).............---- ( -24.30) >DroWil_CAF1 4170 113 - 1 AACA---A-AAAACAAAAAAAAAAGUUACAAAACAAUGAUGCAUAAAA-UCUGUUAUUGGUGUUGGUUGCAGGAGUUGAUUUGCUCCUGUGCAGAUGUUGUACCACAAUGCGAACCUC ....---.-..................(((...(((((((........-...))))))).))).((((((((((((......))))))))(((..(((......))).))).)))).. ( -24.90) >DroMoj_CAF1 3349 91 - 1 UACACUUUGAAAACAA-----------A---AGAAAUGAUGCAUAAAA-UCUGUUAUUGGUGUUGGUUGCAGGAGUUGAUUUGCUCCUGUGCAGACGUUGUGCCAC------------ ....((((.......)-----------)---)).......((((((..-(((((..............((((((((......)))))))))))))..))))))...------------ ( -24.53) >DroAna_CAF1 3300 103 - 1 CCCA---AAAAUACAAAAAAA------ACAAGAAACUGAUGCA------UCUGUUAUUGGUGUUGGUUGCAGGAGUUGAUUUGCUCCUGUGAAGAUGUUGUGCCGCCAAUUGAACCGC ....---....(((((.....------.(((...((..((((.------...).)))..)).))).(..(((((((......)))))))..).....)))))................ ( -21.20) >DroPer_CAF1 4059 95 - 1 AAC-------AAA-AA-----------ACAAAAAACUGAUGCAUAAAACUCUGUUAUUGGUGUUGGUUGCAGGAGUUGAUUUGCUCCUGCGAAGAUGUUGUGCCACAAAUUGAA---- .((-------((.-..-----------.(((...((..(((((........)).)))..)).))).((((((((((......)))))))))).....)))).............---- ( -24.30) >consensus AACA___A_AAAACAA___________ACAAAAAACUGAUGCAUAAAA_UCUGUUAUUGGUGUUGGUUGCAGGAGUUGAUUUGCUCCUGCGAAGAUGUUGUGCCACAAAUUGAA____ .........................................................(((..(...((((((((((......)))))))))).......)..)))............. (-17.85 = -17.80 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:29 2006