Locus 6254

Sequence ID 2L_DroMel_CAF1
Location 17,366,767 – 17,366,869
Length 102
Max. P 0.723239
window9993

overview

Window 3

Location 17,366,767 – 17,366,869
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 79.61
Mean single sequence MFE -28.80
Consensus MFE -18.82
Energy contribution -19.60
Covariance contribution 0.78
Combinations/Pair 1.24
Mean z-score -1.58
Structure conservation index 0.65
SVM decision value 0.40
SVM RNA-class probability 0.723239
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17366767 102 - 22407834
CAAAAACCAACGAAGCUGGAUCUUCGAUAUUAAAGCACGAUUCCCAUACAUUGACAGUGAUCCUGUCAUGCGUUUUCAUCGCCACCUUCCUCUGGCUGGUAU
.....((((.(((((......)))))............(((....(..(((.(((((.....))))))))..)....)))((((........)))))))).. ( -20.90)
>DroVir_CAF1 1973 97 - 1
CA-----ACACGAAGCUGGCCCUUUGUUGCUCAAGCACGACUCCCACACGCUGACGAUCAUCCUGUCGUGCGUGUUCAUAGCCACAUUCCUGUGGCUGGUCU
..-----..((((((......))))))(((....))).(((....(((((((((((.......))))).))))))...((((((((....))))))))))). ( -31.60)
>DroPse_CAF1 3004 102 - 1
CCAAGGACAACGAAGCAGGAACUUCGUUGCUCAAGCACGAUUCGCACACCCUGACAGUGGUCCUGUCGUGCGUCUUCAUAGCCACCUUCCUUUGGCUUGUCU
....(..((((((((......))))))))..)..(((((((..((.(((.......)))))...))))))).....((.(((((........)))))))... ( -31.70)
>DroMoj_CAF1 2338 97 - 1
CA-----ACACGAAGCUGGAACUUCGUUGCUAAAGCACGACUCGCACACACUGACGAUCAUAUUGUCGUGCGUUUUCAUAGUCACCUUCCUAUGGCUGGUCU
..-----..((((((......))))))(((....))).((((.((((.(((.((((((...))))))))).))...(((((........))))))).)))). ( -26.00)
>DroAna_CAF1 2370 102 - 1
CCAAGACCCUGGAAGCUGGAGCAACUCUGUUGAAGCACGACUCCCACACCCUGACCGUGAUCCUGUCGUGCGUCUUCAUAGCCACCUUUCUCUGGCUGGUCU
...(((((...(((((.((((...))))......(((((((.....(((.......))).....)))))))).))))..(((((........)))))))))) ( -30.90)
>DroPer_CAF1 3002 102 - 1
CCAAGGACAACGAAGCAGGAACUUCGUUGCUCAAGCACGAUUCGCACACCCUGACAGUGGUCCUGUCGUGCGUCUUCAUAGCCACCUUCCUUUGGCUUGUCU
....(..((((((((......))))))))..)..(((((((..((.(((.......)))))...))))))).....((.(((((........)))))))... ( -31.70)
>consensus
CAAAG__CAACGAAGCUGGAACUUCGUUGCUCAAGCACGACUCCCACACCCUGACAGUGAUCCUGUCGUGCGUCUUCAUAGCCACCUUCCUCUGGCUGGUCU
..........(((((......)))))........(((((((.....(((.......))).....))))))).......((((((........)))))).... (-18.82 = -19.60 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:28 2006