Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,358,102 – 17,358,234 |
Length | 132 |
Max. P | 0.999205 |
Location | 17,358,102 – 17,358,214 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.10 |
Mean single sequence MFE | -18.14 |
Consensus MFE | -13.96 |
Energy contribution | -14.56 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.72 |
Structure conservation index | 0.77 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574067 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17358102 112 + 22407834 AUUUAUUUUUCAUAACCCACAAUAUGCAGUCGCCC--------CACUGCAGCAAAACCAGAAAAAAUCAAAGCUGAAAAAACACUAAAGAAUAUUUAAGCGGAAUCUGCAAUGGACCUAC ................(((.....((((((.....--------.))))))(((...((.((.....))...(((.......................)))))....)))..)))...... ( -14.80) >DroSec_CAF1 59971 112 + 1 AUUCAUUUUUCAUAACCCACAAUACGCAGUCGCCC--------CACUGCAGCAAAACCAGAAAAAAUCAAAGCUGAAAAAACACUAAAGAAUAUUUUAGCGGAAUCUGCAAUGGACCUAC ................(((......(((((.....--------.))))).(((...((.((.....))...(((((((...............)))))))))....)))..)))...... ( -17.56) >DroSim_CAF1 60464 112 + 1 AUUCAUUUUUCAUAACCCACAAUAUGCAGUCGCCC--------CACUGCAGCAAAACCAGAAAAAAUCAAAGCUGAAAAAACACUAAAGAAUAUUUUAGCGGAAUCUGCAAUGGACCUAC ................(((.....((((((.....--------.))))))(((...((.((.....))...(((((((...............)))))))))....)))..)))...... ( -18.26) >DroEre_CAF1 57326 112 + 1 AUUUAUUUUUCAUAACCCACAAUAUGCAGUCGCCC--------AACUGCAGCAAAACCAGAAAAAAUCAAAGCUGAAAAAACACUAAAGAAUAUUUUAGCGGAAUCUGCAAUGGACCUAC ................(((.....((((((.....--------.))))))(((...((.((.....))...(((((((...............)))))))))....)))..)))...... ( -18.36) >DroYak_CAF1 53746 120 + 1 AUUCAUUUUUCAUAACCCACAAUAUGCAGUUGCCCAACUGCCCAACUGCAGCAAAACAAGAAAAAAUCAAGGCUGAAAAACCACUAAAGAAUAUUUUAGCGGAAUCUGCAAUGGACCUAC ................(((.....((((((((..(....)..))))))))(((.............(((....)))....((.((((((....)))))).))....)))..)))...... ( -21.70) >consensus AUUCAUUUUUCAUAACCCACAAUAUGCAGUCGCCC________CACUGCAGCAAAACCAGAAAAAAUCAAAGCUGAAAAAACACUAAAGAAUAUUUUAGCGGAAUCUGCAAUGGACCUAC ................(((.....((((((..............))))))(((...((.((.....))...(((((((...............)))))))))....)))..)))...... (-13.96 = -14.56 + 0.60)
Location | 17,358,137 – 17,358,234 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 94.21 |
Mean single sequence MFE | -13.28 |
Consensus MFE | -11.90 |
Energy contribution | -12.30 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.33 |
Structure conservation index | 0.90 |
SVM decision value | 3.43 |
SVM RNA-class probability | 0.999205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17358137 97 + 22407834 ---CACUGCAGCAAAACCAGAAAAAAUCAAAGCUGAAAAAACACUAAAGAAUAUUUAAGCGGAAUCUGCAAUGGACCUACCAUUAUUAUACACC--AAAAAA ---....((((.....((.((.....))...(((.......................)))))...))))(((((.....)))))..........--...... ( -10.50) >DroSec_CAF1 60006 99 + 1 ---CACUGCAGCAAAACCAGAAAAAAUCAAAGCUGAAAAAACACUAAAGAAUAUUUUAGCGGAAUCUGCAAUGGACCUACCAUUAUUAUACACACAAAAAAA ---....((((.....((.((.....))...(((((((...............)))))))))...))))(((((.....))))).................. ( -13.96) >DroSim_CAF1 60499 99 + 1 ---CACUGCAGCAAAACCAGAAAAAAUCAAAGCUGAAAAAACACUAAAGAAUAUUUUAGCGGAAUCUGCAAUGGACCUACCAUUAUUAUACACCCAAAAAAA ---....((((.....((.((.....))...(((((((...............)))))))))...))))(((((.....))))).................. ( -13.96) >DroEre_CAF1 57361 98 + 1 ---AACUGCAGCAAAACCAGAAAAAAUCAAAGCUGAAAAAACACUAAAGAAUAUUUUAGCGGAAUCUGCAAUGGACCUACCAUUAUGAUACACACA-AAAAA ---....((((.....((.((.....))...(((((((...............)))))))))...))))(((((.....)))))............-..... ( -13.96) >DroYak_CAF1 53786 101 + 1 CCCAACUGCAGCAAAACAAGAAAAAAUCAAGGCUGAAAAACCACUAAAGAAUAUUUUAGCGGAAUCUGCAAUGGACCUACCAUUAUUAUACACACA-AAAAA .(((..(((((...............(((....)))....((.((((((....)))))).))...))))).)))......................-..... ( -14.00) >consensus ___CACUGCAGCAAAACCAGAAAAAAUCAAAGCUGAAAAAACACUAAAGAAUAUUUUAGCGGAAUCUGCAAUGGACCUACCAUUAUUAUACACACAAAAAAA .......((((.....((.((.....))...(((((((...............)))))))))...))))(((((.....))))).................. (-11.90 = -12.30 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:27 2006