Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,357,275 – 17,357,394 |
Length | 119 |
Max. P | 0.797312 |
Location | 17,357,275 – 17,357,394 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.88 |
Mean single sequence MFE | -29.62 |
Consensus MFE | -26.18 |
Energy contribution | -26.46 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.07 |
Mean z-score | -1.34 |
Structure conservation index | 0.88 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.797312 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17357275 119 + 22407834 UGACCCAACAAGUUGUUGAGUGCUCAAGGACCUGUGCCAAUAUUUGGGUCAACAAGUUGGAGCUCACAUCUGGAGUACACAAAAGCAAUAA-AAAUGGGGCAAGAACUAAAGGUGAACAA ((.((((....(((((((.((((((..(((..((.(((...(((((......)))))..).)).))..))).)))))).))...)))))..-...)))).)).................. ( -26.90) >DroSec_CAF1 59126 119 + 1 UGACCCAACAAGUUGUUGAGUGCUCAAGGACCUGUGUUAAUAUUUGGGUCAACAAAUUGGAGCUCACAUCUGGAGUACACAAAAGCAAUAA-AAAUGGGGCAAGAACUAAAGGUAAGCAA ((.((((....(((((((.((((((..(((..((.(((...(((((......)))))...))).))..))).)))))).))...)))))..-...)))).)).................. ( -26.70) >DroSim_CAF1 59729 119 + 1 UGACCCAACAAGUUGUUGAGUGCUCAAGGACCGGUGCCAAUAUUUGGGUCAACAAGUUGGAGCUCACAUCUGGAGUACACAAAAGCAAUAA-AAAUGGGGCAAGAACUAAAGGUGAGCAA ((((((((.....(((((.(..((........))..)))))).))))))))..........((((((...(((.(....)....((..((.-...))..)).....)))...)))))).. ( -30.30) >DroEre_CAF1 56907 119 + 1 UGACCCAACAAGUUGUUGAAUGCUCAAGGACCUGUGGCAAUAUUUGGGUCAACAAGUCGCAGCUCACAUCUGGAGCACACAAAAGCACUAA-AAAUGGGGCAGCACCUAAAGGUGAGUAA ((((((((((.(((.((((....)))).))).))).........)))))))..........((((((...(((.((........)).))).-...((((......))))...)))))).. ( -32.60) >DroYak_CAF1 53303 120 + 1 UGACCCAACAAGUUGUUGAGUGCUCAAGGACCUGUGCCAAUAUUUGGGUCAACAAGUCAGAGCUCACAUCUGGAGUACACAAAUGCAAUAAAAAAUGGGGCAGCAACUAAAGGUGAGCAU ((((((((((.(((.((((....)))).))).))).........)))))))..........((((((..((..(((.......(((..((.....))..)))...)))..)))))))).. ( -31.60) >consensus UGACCCAACAAGUUGUUGAGUGCUCAAGGACCUGUGCCAAUAUUUGGGUCAACAAGUUGGAGCUCACAUCUGGAGUACACAAAAGCAAUAA_AAAUGGGGCAAGAACUAAAGGUGAGCAA ((((((((((.(((.((((....)))).))).))).........)))))))..........((((((.......((........)).........(((........)))...)))))).. (-26.18 = -26.46 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:25 2006