| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,356,272 – 17,356,368 |
| Length | 96 |
| Max. P | 0.592169 |
| Location | 17,356,272 – 17,356,368 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.46 |
| Mean single sequence MFE | -28.35 |
| Consensus MFE | -14.24 |
| Energy contribution | -15.02 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.592169 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17356272 96 - 22407834 AUUCGUGUCAGAAAAAGUGGCCGCAGGUCUA------------------------AAACAAUAGAAGCCAAAUUAUGGCUAAAAGCGGAAAAACUGCCACACGAAUCGUUACGCGAGUUG .(((((((..(....(((..((((...((((------------------------......))))(((((.....)))))....))))....))).).)))))))(((.....))).... ( -26.30) >DroSec_CAF1 58126 93 - 1 AUUCGUGUCAGAAAAAGUGGCC---GGUCUA------------------------AAACAAUAGAAGCCAAAUUAUGGCUAAAAGCGGAAAAACUGGCAAGCGAAUUGUUACGCGAUUUG ..((((((.(.((...((.(((---((((((------------------------......))))(((((.....))))).............)))))..))...)).).)))))).... ( -23.20) >DroSim_CAF1 58725 94 - 1 AUUCGUGUCAGAAAAAGUGGCCGCAGGUCUA------------------------AAACAAUAGAAGCCAAAUU-UGGAUAAAAG-GGAAAAACUGCCCAGGGAAUUGUUACGCGAUUUG ..((((((..........((((...))))..------------------------.((((((.....(((....-)))......(-((........))).....)))))))))))).... ( -18.40) >DroEre_CAF1 55877 96 - 1 AUUCGUGUCAGAAAAAGUGGCCGCGGGUCUA------------------------AAACAAUUGCAGCCAAAUUAUGGCUAAAAGCGGAAAAGCUGCAACGCGUAUUGUUACGCGAUUUG ((((((((((.......))).)))))))...------------------------......(((((((((.....)))))...(((......)))))))((((((....))))))..... ( -27.40) >DroYak_CAF1 52279 96 - 1 AUUCGUGUCAGAAAAAGUGGCCGCGGGUCUA------------------------AAACAAUUGCAGCCAAAUUAUGGCUAAAAGCGGAAAAGCUGCCACGCGAAUUGUACCGCGAUUUG ......((((.......))))(((((.....------------------------..(((((((((((((.....)))))....((((.....))))...)).)))))).)))))..... ( -25.20) >DroAna_CAF1 58502 120 - 1 AUUGGUGUCAGCGAAAGUGGCCUCGGGCCUUUAGCAGGAGUGUGGGGGAGGUGGCCAACAAUUGUAGCCAAAUUAUGGCUAAGGGCCGCAAAACUCGCACGCUUAUUGUUGGCUGAUUGG ......((((((......((((...))))..(((((((((((((.(((..((((((........((((((.....))))))..))))))....))).))))))).))))))))))))... ( -49.60) >consensus AUUCGUGUCAGAAAAAGUGGCCGCGGGUCUA________________________AAACAAUAGAAGCCAAAUUAUGGCUAAAAGCGGAAAAACUGCCACGCGAAUUGUUACGCGAUUUG (((((((((((.......((((...))))....................................(((((.....))))).............)))..)))))))).............. (-14.24 = -15.02 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:22 2006