Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,838,037 – 1,838,127 |
Length | 90 |
Max. P | 0.697697 |
Location | 1,838,037 – 1,838,127 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 79.42 |
Mean single sequence MFE | -28.89 |
Consensus MFE | -22.23 |
Energy contribution | -22.15 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.11 |
Mean z-score | -1.21 |
Structure conservation index | 0.77 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697697 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1838037 90 - 22407834 -GCCCCCUUUCCACCCACUCCAC---------CCAUAAAAGCACCCUUCCUGGGGGCAAACCGAAAGCCAACAUUAGCUGGGGCCACGUUGAAGGCGGCG -(((.(((((.......((((..---------........((.((((....))))))........(((........))))))).......))))).))). ( -26.04) >DroSec_CAF1 6266 81 - 1 -GCCCCCUUUCCACCCA------------------CAAGAGCACCCUUCCUGGGGGCAAACCGAAAGCCAACAUUAGCUGGGGCCACGUUGAAGGCGGCG -(((.........(((.------------------.....((.((((....))))))........(((........))))))(((........)))))). ( -24.80) >DroSim_CAF1 6359 81 - 1 -GCCCCCUUUCCACCCA------------------CAAGAGCACCCUUCCUGGGGGCAAACCGAAAGCCAACAUUAGCUGGGGCCACGUUGAAGGCGGCG -(((.........(((.------------------.....((.((((....))))))........(((........))))))(((........)))))). ( -24.80) >DroEre_CAF1 6509 89 - 1 -GCCCCCUUUGCACCUACUCCAC---------CCAC-AGCGCCCCCUUUCCGGGGGCAAACUGAAAGCCAACAUUAGCUGGGGCCACGUUGAAGGCGGCG -(((.((((((.((........(---------((.(-(((((((((.....))))))....((.....))......)))))))....)))))))).))). ( -34.00) >DroYak_CAF1 6487 99 - 1 -GCCCCCUUUGCACCCACUCCAGCCACUCCACCCACAAGCGCCCCCUUCCCGGGGGCAAACUGAAAGCCAACAUUAGCUGGGGCCACGUUGAAGGCGGCG -(((.((((((.((...(((((((................((((((.....))))))....((.....))......)))))))....)))))))).))). ( -35.90) >DroAna_CAF1 6566 86 - 1 UGCCACAUUUUCGCCCAUUCCUU---------UCA-----GCUGCAGCCCUUAGGGCAAAGCCAAAGCCAACAUUAGCUGGGGCCAUGUUGAAGGCGGCG ...........((((.....(((---------(((-----((....((((...))))...(((..(((........)))..)))...)))))))).)))) ( -27.80) >consensus _GCCCCCUUUCCACCCACUCCA__________CCACAAGAGCACCCUUCCUGGGGGCAAACCGAAAGCCAACAUUAGCUGGGGCCACGUUGAAGGCGGCG .(((.........(((........................((.((((....))))))........(((........))))))(((........)))))). (-22.23 = -22.15 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:17 2006