Locus 6246

Sequence ID 2L_DroMel_CAF1
Location 17,352,772 – 17,352,868
Length 96
Max. P 0.684134
window9980

overview

Window 0

Location 17,352,772 – 17,352,868
Length 96
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 85.80
Mean single sequence MFE -17.56
Consensus MFE -12.72
Energy contribution -13.64
Covariance contribution 0.92
Combinations/Pair 1.12
Mean z-score -1.81
Structure conservation index 0.72
SVM decision value 0.31
SVM RNA-class probability 0.684134
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17352772 96 + 22407834
-AAUGAAAAUCUAAAGUUUAAAAUCUUUUUCUUUAGAUGCAAAAAAGUGUGCUAGAAAAACGGAAAUGCCGCGCUCACGCACACACUCAAAGAAA--AA
-..((...((((((((..............)))))))).)).....((((((..((....(((.....)))...))..))))))...........--.. ( -19.34)
>DroSec_CAF1 54617 96 + 1
-AAUCAAAAUCUAAAGUUUAAAAUCUUUCUCUUUGGAUGCAACAAAGUGUGCUAGAAAAACGGAAAUGCGGCGCUCACGCACACACUCAAAGAAA--AA
-..((...((((((((..............))))))))........((((((..((....((......))....))..)))))).......))..--.. ( -16.84)
>DroSim_CAF1 50965 90 + 1
-AAUCGAAAUCUAAAGUUUAAAAUCU------UUGGAUGCAACAAAGUGUGCUAGAAAAACGGAAAUACCGCGCUCACGCACACACUCAAAGAAA--AA
-..((...((((((((........))------))))))........((((((..((....(((.....)))...))..)))))).......))..--.. ( -19.40)
>DroEre_CAF1 52434 97 + 1
CUGUCAAAAUCUAUAGUUUAAAAUCUCUCCCUUUGGACGCAACAAAGUGUGCUAGAAAAACGGAAAUGCCGCGC--ACGCACACACUCAAAGAAAAAAA
.........(((...(((((((.........)))))))........((((((........(((.....)))...--..))))))......)))...... ( -14.82)
>DroYak_CAF1 48730 93 + 1
---UGUAAUUCUAAAGUUAAAAAUCUCUCCUUUUGGACGCUACAAAGUGUGCUAGAA-AACGGAAACGCCGCGCACACGCACACACUCAAAGAAA--AG
---.....((((...............(((....)))........((((((......-..((....))..(((....))).))))))...)))).--.. ( -17.40)
>consensus
_AAUCAAAAUCUAAAGUUUAAAAUCUCUCCCUUUGGAUGCAACAAAGUGUGCUAGAAAAACGGAAAUGCCGCGCUCACGCACACACUCAAAGAAA__AA
........((((((((..............))))))))........((((((........(((.....))).......))))))............... (-12.72 = -13.64 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:15 2006