| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,349,383 – 17,349,481 |
| Length | 98 |
| Max. P | 0.854005 |
| Location | 17,349,383 – 17,349,481 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.31 |
| Mean single sequence MFE | -21.93 |
| Consensus MFE | -11.52 |
| Energy contribution | -12.50 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.854005 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17349383 98 - 22407834 C---AGUUAGUAACAAAUCAAGCACUGCAGUUAAUUGCAUUUAAAAUUAAUUAGCAUUAAAUGCUUACAAAUUUUGUGGCAUAACGCAGG-------------------UCUGGUAAAAU .---............((((..(.((((.((((..(((...(((((((....(((((...)))))....)))))))..))))))))))))-------------------..))))..... ( -22.50) >DroSec_CAF1 51272 98 - 1 C---AGUUAGUAACAAAUCAAGCACUGCAGUUAAUUGCAUUUAAAAUUAAUUAGCAUUAAAUGCUUACAAAUUUUGUGGCAUAACGCAGG-------------------CUUGGUAAAAU .---............(((((((.((((.((((..(((...(((((((....(((((...)))))....)))))))..))))))))))))-------------------))))))..... ( -27.70) >DroEre_CAF1 47641 106 - 1 C---AGUUAGUAACAAAUCAAGCACUGCAGUUAAUUGCAUUUAAAAUUAAUUAGCAUUAAAUGCUUACAAAUUUUGUGGCAUAACGCAGG-----------UACUUGGGUUGGGUAAAAU .---.........(((..((((..((((.((((..(((...(((((((....(((((...)))))....)))))))..))))))))))).-----------..))))..)))........ ( -25.10) >DroYak_CAF1 44775 106 - 1 G---AGUUAGUAACAAAUCAAACACUGUAGUUAAUUGCAAUUAAAAUUAAUUAGCAUUAAAUGCUUACAAAUUUUGUGGCAAAACGCAGG-----------GGCUUGGGUUGGGUAAAAU .---.........(((..(((.(.((((.(((..((((...(((((((....(((((...)))))....)))))))..))))))))))).-----------.).)))..)))........ ( -20.40) >DroMoj_CAF1 78117 82 - 1 U---AAUUACGCACAAAUCAAGCACUCGACUUAAUUGCAUUUAAAUGAAAUUAGCAUUAAAUGUUUACAAAUUUUGUGGCAUAUU----------------------------------- .---......(((((((..((((....).)))....((((((((.((.......))))))))))........))))).)).....----------------------------------- ( -8.80) >DroAna_CAF1 53063 120 - 1 CAUUAGUUGCUAUCAAAUCAGGCACUCGAGUUAAUUGCAUUUAAAUUUAAUUAGCAUUAAAUGUUUACAAAUUUUGCGGCAUAAUUGAGGCCAAUAAACGUUGCUGGGAGAUGGGAACUG ...(((((.(((((...((((((.(((((......(((....((((((....(((((...)))))...))))))....)))...)))))))((((....))))))))..))))).))))) ( -27.10) >consensus C___AGUUAGUAACAAAUCAAGCACUGCAGUUAAUUGCAUUUAAAAUUAAUUAGCAUUAAAUGCUUACAAAUUUUGUGGCAUAACGCAGG___________________UUUGGUAAAAU ........................((((.((((..(((...(((((((....(((((...)))))....)))))))..)))))))))))............................... (-11.52 = -12.50 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:14 2006