Locus 6244

Sequence ID	2L_DroMel_CAF1
Location	17,347,731 – 17,347,823
Length	92
Max. P	0.569590

overview

Window 8

Location	17,347,731 – 17,347,823
Length	92
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	90.38
Mean single sequence MFE	-28.12
Consensus MFE	-21.22
Energy contribution	-21.70
Covariance contribution	0.48
Combinations/Pair	1.14
Mean z-score	-1.59
Structure conservation index	0.75
SVM decision value	0.07
SVM RNA-class probability	0.569590
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17347731 92 - 22407834
GUAACUUUGGCAGGUGGUUGGUUACGGGCCGGAGUUGGGCAAGAAGAACUCAGACGAGUGGUUGGGGGGUGUUAAGUCCGACCUGUGCUUAA
.((((((((((..((((....))))..))))))))))((((......((((....))))(((((((..........)))))))..))))... ( -29.70)
>DroSec_CAF1 49652 86 - 1
GUAACUUUGGCAGGUG----GUUACGGGCAGCAGUUGGGCAAGGAGAACUCAGACGAAUGGUUGG--GGUGUUAAGCCCGACCAGUGCUUAA
((((((.........)----)))))(((((...(((((((...((..((((.(((.....))).)--))).))..)))))))...))))).. ( -26.90)
>DroSim_CAF1 46756 86 - 1
GUAACUUUGGCAGGUG----GUUACGGGCCGGAGUUGGGCAAGAAGAACUCAGACGAGUGGUUGG--GGUGUUAAGCCCGACCGGUGCUUAA
.((((((((((..((.----...))..))))))))))((((......((((....))))((((((--(.(....).)))))))..))))... ( -33.30)
>DroEre_CAF1 46020 85 - 1
GUAACUUUGGCAGGUG----GUUGCGGGUCGGAGUUGGGCGAGGAGAACUCAGACGAGUGGU-GG--AGUGUUAAGCCCGACCUGUGCUUAA
((((((.........)----)))))(((((((.(((((((...((..((((..((.....))-.)--))).))..)))))))))).)))).. ( -27.50)
>DroYak_CAF1 43232 86 - 1
GUAACUUUGGCAGGUG----GUUACGGGUCGGAGCUGGGCAAGAAGAACUCAGACGAGUGGUUGG--AGUGUUAAGCCCGAACUGUGCUUAA
((((((.........)----)))))((.((((.(((..(((.((...((((....))))..))..--..)))..))))))).))........ ( -23.20)
>consensus
GUAACUUUGGCAGGUG____GUUACGGGCCGGAGUUGGGCAAGAAGAACUCAGACGAGUGGUUGG__GGUGUUAAGCCCGACCUGUGCUUAA
.((((((((((..(((......)))..))))))))))((((......((((....))))((((((...((.....))))))))..))))... (-21.22 = -21.70 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:13 2006