| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,347,398 – 17,347,529 |
| Length | 131 |
| Max. P | 0.932146 |
| Location | 17,347,398 – 17,347,490 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 94.24 |
| Mean single sequence MFE | -19.69 |
| Consensus MFE | -17.82 |
| Energy contribution | -18.26 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.699714 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17347398 92 + 22407834 AACAUUGGACAGCCAACUAGUUCAAUGCGAUUGUAGAUGAAGCUGUUCCACAAAAUAUUCCCCCAGCCACGGAUAAAGACAGAAAUGGCUGG .....((((((((((.(((..((.....))...))).))..)))).))))............(((((((................))))))) ( -20.59) >DroSec_CAF1 49328 92 + 1 AACAUUGGACAGCCAACUAGUUCAAUGCUAUUGUAGAUGAAGCUGUUCCACAAAAUAUUCCCCCAACCAAGCAUAAAGACAGAAAUGGCUGG .........((((((.....((((.(((....)))..)))).(((((..............................)))))...)))))). ( -15.61) >DroSim_CAF1 46423 92 + 1 AACAUUGGACAGCCAACUAGUUCAAUGCUAUUGUAGAUGAAGCUGUUCCACAAAAUAUUCCCCCAGCCAGGCAUAAAGACAGAAAUGGCUGG .....((((((((.......((((.(((....)))..)))))))).))))............(((((((..(.........)...))))))) ( -22.61) >DroEre_CAF1 45696 92 + 1 AACACUGGACAGCCAACUAGUUCAAUGCUAUUGUAGAUGAAGCUGUUCCACAAAAUAUUCCCCCAGCCAUGCAUAAAGACACAAAUGGCCGG .....((((((((.......((((.(((....)))..)))))))).))))............((.(((((..............))))).)) ( -19.25) >DroYak_CAF1 42921 92 + 1 AACAUUGAACAGCCAACUAGUUCAAUGCUAUUGUUAAUGAAGCUGUUCCGCAAAAUACUCCCCCAGCCACGCAUAAAGACAGAAAUGGCUGG ......((((((((((.((((.....)))))))........)))))))..............(((((((..(.........)...))))))) ( -20.40) >consensus AACAUUGGACAGCCAACUAGUUCAAUGCUAUUGUAGAUGAAGCUGUUCCACAAAAUAUUCCCCCAGCCACGCAUAAAGACAGAAAUGGCUGG ......(((((((.......((((.(((....)))..)))))))))))..............(((((((................))))))) (-17.82 = -18.26 + 0.44)
| Location | 17,347,438 – 17,347,529 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 96.37 |
| Mean single sequence MFE | -15.80 |
| Consensus MFE | -13.23 |
| Energy contribution | -13.63 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.932146 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17347438 91 + 22407834 AGCUGUUCCACAAAAUAUUCCCCCAGCCACGGAUAAAGACAGAAAUGGCUGGCAUAAAAUACAAAGCUUAAUGCUUUAAUAAAAUGCCUCA (((((((...........(((.........)))..........)))))))(((((.......(((((.....)))))......)))))... ( -15.62) >DroSec_CAF1 49368 91 + 1 AGCUGUUCCACAAAAUAUUCCCCCAACCAAGCAUAAAGACAGAAAUGGCUGGCAUAAAAUACAAAGCUUAAUGCUUUAAUAAAAUGCCUCA .(((.........................)))....((.((....)).))(((((.......(((((.....)))))......)))))... ( -13.23) >DroSim_CAF1 46463 91 + 1 AGCUGUUCCACAAAAUAUUCCCCCAGCCAGGCAUAAAGACAGAAAUGGCUGGCAUAAAAUACAAAGCUUAAUGCUUUAAUAAAAUGCCUCA .((......................(((((.(((..........))).))))).........(((((.....)))))........)).... ( -17.30) >DroEre_CAF1 45736 91 + 1 AGCUGUUCCACAAAAUAUUCCCCCAGCCAUGCAUAAAGACACAAAUGGCCGGCAUAAAAUACAAAGCUUAAUGCUUUAAUAAAAUGCCUCA .........................(((((..............))))).(((((.......(((((.....)))))......)))))... ( -15.86) >DroYak_CAF1 42961 91 + 1 AGCUGUUCCGCAAAAUACUCCCCCAGCCACGCAUAAAGACAGAAAUGGCUGGCAUAAAAUACAAAGCUUAAUGCUUUAAUAAAAUGCCUCA .........(((..........(((((((..(.........)...)))))))..........(((((.....))))).......))).... ( -17.00) >consensus AGCUGUUCCACAAAAUAUUCCCCCAGCCACGCAUAAAGACAGAAAUGGCUGGCAUAAAAUACAAAGCUUAAUGCUUUAAUAAAAUGCCUCA .((...................(((((((................)))))))..........(((((.....)))))........)).... (-13.23 = -13.63 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:12 2006