Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,346,798 – 17,346,889 |
Length | 91 |
Max. P | 0.570276 |
Location | 17,346,798 – 17,346,889 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 82.01 |
Mean single sequence MFE | -19.32 |
Consensus MFE | -13.06 |
Energy contribution | -13.13 |
Covariance contribution | 0.07 |
Combinations/Pair | 1.19 |
Mean z-score | -1.55 |
Structure conservation index | 0.68 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570276 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17346798 91 - 22407834 GCGAGCAACGUGGCGUAUACACAACGCU----CACCGCAAACUAACACAG---GC-ACA--CACGUAUUUCUCGCCUUAUGAAUUCGUAUUUCAUAUGAAA (((((..(((((((((.......)))).----....((............---))-...--)))))....)))))..((((((.......))))))..... ( -20.70) >DroVir_CAF1 60165 79 - 1 GCGGCCAACGUGGCGUAUACACAACGCA----CAA---------------CAUGCAACG--CGCAUAUUUUUCGCCUUAUGAAUUCGUAUUUUAUAUGAA- ..(((....((.((((.......)))).----..)---------------)((((....--.)))).......))).......(((((((...)))))))- ( -15.40) >DroSec_CAF1 48718 95 - 1 GCGAGCAACGUGGCGUAUACACAACGCUCACUCACCGCAAACUAACACAG---GC-ACA--CACGUAUUUCUCGCCUUAUGAAUUCGUAUUUCAUAUGAAA (((((..(((((((((.......)))).........((............---))-...--)))))....)))))..((((((.......))))))..... ( -20.70) >DroEre_CAF1 45134 93 - 1 GCGAGCAACGUGGCGUAUACACAACGCU----AACCGCAAACUAACACAG---GC-ACACACACGUAUUUCUCGCCUUAUGAAUUCGUAUUUCAUAUGAAA (((((..(((((((((.......)))).----....((............---))-.....)))))....)))))..((((((.......))))))..... ( -20.70) >DroYak_CAF1 42412 91 - 1 GCGAGCAACGUGGCGUGUACACAACGCU----CACCGCAAACUAACACAG---GC-ACA--CACGUAUUUCUCGCCUUAUGAAUUCGUAUUUCAUAUGAAA (((((..(((((..((((.......((.----....))...((.....))---))-)).--)))))....)))))..((((((.......))))))..... ( -21.60) >DroAna_CAF1 51016 93 - 1 GCGAGCAACGUGGCGUAUACACAACACA----CACCGCAAACUCCCAUAC---AU-CUCGACGUAUAUUUCUCGCCUUAUGAAUUCGCAUUUCAUAUGAAA (((((....((((.((...........)----).))))........((((---..-......))))....)))))..((((((.......))))))..... ( -16.80) >consensus GCGAGCAACGUGGCGUAUACACAACGCU____CACCGCAAACUAACACAG___GC_ACA__CACGUAUUUCUCGCCUUAUGAAUUCGUAUUUCAUAUGAAA (((((..(((((((((.......)))).........(........)...............)))))....)))))..((((((.......))))))..... (-13.06 = -13.13 + 0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:10 2006