Locus 6241

Sequence ID 2L_DroMel_CAF1
Location 17,345,720 – 17,345,816
Length 96
Max. P 0.995021
window9974

overview

Window 4

Location 17,345,720 – 17,345,816
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 97.08
Mean single sequence MFE -20.78
Consensus MFE -20.64
Energy contribution -20.40
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -1.72
Structure conservation index 0.99
SVM decision value 2.53
SVM RNA-class probability 0.995021
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17345720 96 - 22407834
AAAGAUUUGACACUCCGUAAAAGUGUUUAAAUGCCUGAUGAAAUAUAAAUACAAUUUUUUCGCCUGCGUCCGCAGGGUGUUUUAUAAUUUUUAAUU
(((((((.(((((.........(((((((.((..(....)..)).)))))))..........(((((....))))))))))....))))))).... ( -20.40)
>DroSec_CAF1 47567 96 - 1
GAAGAUUUGACACUCUGUAAAAGUGUUUAAAUGCCUGAUGAAAUAUAAAUACAAUUUUUUCGCCUGCGUCCGCAGGGUGUUUUAUAAUUUUUAAUU
(((((((.((((((((((....(((((((.((..(....)..)).)))))))........((....))...))))))))))....))))))).... ( -21.50)
>DroSim_CAF1 44705 96 - 1
GAAGAUUUGACACUCUGUAAAAGUGUUUAAAUGCCUGAUGAAAUAUAAAUACAAUUUUUUCGCCUGCGUCCGCAGGGUGUUUUAUAAUUUUUAAUU
(((((((.((((((((((....(((((((.((..(....)..)).)))))))........((....))...))))))))))....))))))).... ( -21.50)
>DroEre_CAF1 44026 96 - 1
AAAGAUUUGACACUCCGUAUAAGUGUUUAAAUGCCUGAUGAAAUAUAAAUACAAUUUUUUCGCCUGCGUCCGCAGGGUGUUUUAUAAUUUUUAAUU
(((((((.(((((.........(((((((.((..(....)..)).)))))))..........(((((....))))))))))....))))))).... ( -20.40)
>DroYak_CAF1 40095 96 - 1
GAAGAUUUGACACUUCGUAAAAGUGUUUAAAUGCCCAAUGAAAUAUAAAUACAAUUUUUUCGCCUGCGUCCGCAGGGUGUUUUAUAAUUUUUAAUU
(((((((.(((((.........(((((((.((..........)).)))))))..........(((((....))))))))))....))))))).... ( -20.10)
>consensus
GAAGAUUUGACACUCCGUAAAAGUGUUUAAAUGCCUGAUGAAAUAUAAAUACAAUUUUUUCGCCUGCGUCCGCAGGGUGUUUUAUAAUUUUUAAUU
(((((((.(((((.........(((((((.((..(....)..)).)))))))..........(((((....))))))))))....))))))).... (-20.64 = -20.40 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:09 2006