Locus 6239

Sequence ID	2L_DroMel_CAF1
Location	17,341,530 – 17,341,632
Length	102
Max. P	0.878159

overview

Window 1

Location	17,341,530 – 17,341,632
Length	102
Sequences	6
Columns	120
Reading direction	forward
Mean pairwise identity	66.50
Mean single sequence MFE	-31.21
Consensus MFE	-10.73
Energy contribution	-11.10
Covariance contribution	0.37
Combinations/Pair	1.38
Mean z-score	-2.06
Structure conservation index	0.34
SVM decision value	0.90
SVM RNA-class probability	0.878159
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17341530 102 + 22407834
ACUCAGCG---CCAGCUGAGGUUGGCCAACAGGU-CAGCAGAGUGUUUAGGGUGAAUGCGGAAUUGGUAACAG--UUU---AGG----UUGUAUUCAGAGCAUCUC-----AUGAUAUUU
.((((((.---...))))))(((((((....)))-)))).((((((((.(((((...((.((((((....)))--)))---..)----)..))))).))))).)))-----......... ( -37.30)
>DroSec_CAF1 37884 102 + 1
ACUCAGCG---CCAGCUGAGGUUGGCCAACAGGU-CAGCAGAGUGUUUAGGGUGAAUGCGAAAUUGGUAACAG--CUC---AGG----UUAUAUACAGUUCAUCUC-----AUGAUAUCU
.((((((.---...))))))(((((((....)))-))))(((.((((..((((((((.........(((((..--...---..)----)))).....)))))))).-----..))))))) ( -31.94)
>DroSim_CAF1 40523 102 + 1
ACUCAGCG---CCAGCUGAGGUUGGCCAACAGGU-CAGCAGAGUGUUUAGGGUGAAUGCGGAAUUGGUAACAG--CUC---AGG----UUAUAUUCAGAGCAUCUC-----GUGAUAUCU
.((((((.---...))))))(((((((....)))-)))).((((((((.(((((...((.((.(((....)))--.))---..)----)..))))).))))).)))-----......... ( -34.10)
>DroEre_CAF1 40061 93 + 1
ACUCAGCG---CAA-CUGAAGUUGGCCAACAGGUUUAGCAGGGUGUUUAGGGUUAAUGCGGAGUUGGUAACAA--UGC---CAGCGCAUUAUAUCAAAAU-----------AA-------
.((.((((---(..-(((((.(((.....))).)))))....))))).))(((((((((...(((((((....--)))---)))))))))).))).....-----------..------- ( -26.50)
>DroYak_CAF1 34911 96 + 1
ACUCAGCG---CAAGCUGAGGUUGGCCAACGGGUUCAGCAGGGUGUAUUGGGUUAAUACACACUUGGUAACAG--UUU---UAG----UUAUACUUAGAU-----------AUUAUACU-
.((((((.---...))))))(((((((....)).)))))(((((((((((...)))))))).))).(((((..--...---..)----))))........-----------........- ( -29.00)
>DroAna_CAF1 46644 105 + 1
-CCCGGUGGGUGCAGCUGAGCCUGGCUACCAGGAAGAGUUGGGUAUUUUGGGACUACCCAAGAUUGGUAACACAGAUCUGUAGA----UUAGA---AUUUUAUCUGGAAAUAA-------
-.((((...((((((((...(((((...)))))...)))))...((((((((....))))))))......)))...((((....----.))))---.......))))......------- ( -28.40)
>consensus
ACUCAGCG___CCAGCUGAGGUUGGCCAACAGGU_CAGCAGAGUGUUUAGGGUGAAUGCGGAAUUGGUAACAG__UUC___AGG____UUAUAUUCAGAUCAUCUC_____AUGAUAU__
.((((((.......))))))(((((((....))).))))................................................................................. (-10.73 = -11.10 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:06 2006