Locus 6236

Sequence ID 2L_DroMel_CAF1
Location 17,329,912 – 17,330,024
Length 112
Max. P 0.887395
window9967

overview

Window 7

Location 17,329,912 – 17,330,024
Length 112
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 66.14
Mean single sequence MFE -20.62
Consensus MFE -7.42
Energy contribution -8.46
Covariance contribution 1.04
Combinations/Pair 1.06
Mean z-score -2.13
Structure conservation index 0.36
SVM decision value 0.95
SVM RNA-class probability 0.887395
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17329912 112 + 22407834
UAACACAAGUGCAUUUCUAUGUCAUCUACAUACAUGG----ACAUCGAAGUGAGUCUAUUUACACCUAAUCAAUGUAAUAUUGAAAUGAAGUUGACACACACGGGUGCACUG--CACA
.......(((((((((...(((((.((.(((..((((----((.((.....))))))))..........((((((...)))))).))).)).))))).....))))))))).--.... ( -24.80)
>DroSec_CAF1 27412 92 + 1
UAA----------------------CUACCCACAUUG----ACAUCGAAGUGAGUCAAUUUACACCUAAUCAAUGUAAUAUUGAAAUGAAGUUGACACACACGGUUGCACUGCACACA
...----------------------.......((.((----..((((..(((.((((((((.((.....((((((...))))))..)))))))))).))).))))..)).))...... ( -16.00)
>DroEre_CAF1 29529 87 + 1
UAACACAAGUGCAU-----------------------------UUGCAAGUGAGUCAAUUUACACCUAAUCAAUGUAAUAUUGAAAUGAAGUUGACACACACGGCUGCACUG--CACA
........(((((.-----------------------------.((((.(((.((((((((.((.....((((((...))))))..))))))))))...)))...)))).))--))). ( -22.30)
>DroYak_CAF1 24361 87 + 1
UAACAAAAGUGCAU-----------------------------GUGGAAGUGAGUCAAUUUACACCUAAUCAAUGUAAUAUUGAAACGAAGUUGACACACACGGAUGCACUG--CACA
.......(((((((-----------------------------.((...(((.((((((((........((((((...))))))....)))))))).))).)).))))))).--.... ( -24.40)
>DroAna_CAF1 34839 95 + 1
UGAGGCAAUUGUAGUU--------GCAACA--UAUUGAGACACAUCACAGUGAAUAAAUUUACACCUAAUCAAGUGAAUAUUGAAACAAAGGUGGCCCAA-----------G--CCCA
((.(((...(((.((.--------.(((..--..)))..)))))..................(((((..((((.......)))).....)))))))))).-----------.--.... ( -15.60)
>consensus
UAACACAAGUGCAU___________C_AC____AU_G____ACAUCGAAGUGAGUCAAUUUACACCUAAUCAAUGUAAUAUUGAAAUGAAGUUGACACACACGG_UGCACUG__CACA
.................................................(((.((((((((........(((((.....)))))....)))))))).))).................. ( -7.42 =  -8.46 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:02 2006