Locus 6233

Sequence ID 2L_DroMel_CAF1
Location 17,323,619 – 17,323,709
Length 90
Max. P 0.530097
window9961

overview

Window 1

Location 17,323,619 – 17,323,709
Length 90
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 80.19
Mean single sequence MFE -17.25
Consensus MFE -10.20
Energy contribution -10.28
Covariance contribution 0.08
Combinations/Pair 1.18
Mean z-score -1.64
Structure conservation index 0.59
SVM decision value -0.01
SVM RNA-class probability 0.530097
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17323619 90 + 22407834
GACAUUUUCCCCAUAAUUACCCGUGCGCAAAGUGAAACCAAAUUGUUGAUUUUAUUUUGCAUUAUGGGAGUCGUUUUUUUUU-----UUUGCCAU
((((((........)))..((((((.(((((((((((.(((....))).)))))))))))..)))))).)))..........-----........ ( -19.70)
>DroVir_CAF1 37973 92 + 1
GACAUUUUU-CCAUAAUUAC-CGUGCGCAAAGUGAAGCAUAAUUGUUGAUUUUAUUUUGCAUUAUGCUUUGCACUUUCCUUU-UUUUUUUAACAU
.........-..........-..........(..(((((((((.((.((......)).)))))))))))..)..........-............ ( -14.80)
>DroSec_CAF1 21285 85 + 1
GACAUUUUCCCCAUAAUUACCCGUGCGCAAAGUGAAGCCAAAUUGUUGAUUUUAUUUUGCAUUAUGGGAGUCGUUUUU----------UUCCCAU
..........................((((((((((..(((....)))..))))))))))...(((((((........----------))))))) ( -19.80)
>DroEre_CAF1 23128 89 + 1
GACAUUUUCCCCAUAAUUACCCGUGCGCAAAGUGAAGCCAAAUUGUUGAUUUUAUUUUGCAUUAUGGGAGUCCUUUUUUUCC-----UUCUGC-U
.........((((((((.........((((((((((..(((....)))..))))))))))))))))))..............-----......-. ( -19.00)
>DroMoj_CAF1 46905 93 + 1
GACAUUUUU-CCAUAAUUAC-CGAGCGCAAAGUGAAGCAUAAUUGUUGAUUUUAUUUUGCAUUAUGCUCUGCAUUUUUUUCCAUCUCUUUUACAU
.........-..........-.(((((((((((((((((.......)).))))))))))).....)))).......................... ( -14.50)
>DroAna_CAF1 29987 89 + 1
GACAUUUUCCCCAUAAUUACCCGUGCGCAAAGUGAGGCAAAAUUGUUGAUUUUAUUUUGCAUUACGGCACAGUUUCAUAUCC-----UUUUUU-U
....................(((((.((((((((((((((.....))).)))))))))))..)))))...............-----......-. ( -15.70)
>consensus
GACAUUUUCCCCAUAAUUACCCGUGCGCAAAGUGAAGCAAAAUUGUUGAUUUUAUUUUGCAUUAUGGGAGUCAUUUUUUUCC_____UUUUACAU
....................(((((.((((((((((((.........).)))))))))))..)))))............................ (-10.20 = -10.28 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:56 2006