Locus 6232

Sequence ID 2L_DroMel_CAF1
Location 17,323,340 – 17,323,457
Length 117
Max. P 0.536291
window9960

overview

Window 0

Location 17,323,340 – 17,323,457
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.08
Mean single sequence MFE -28.42
Consensus MFE -23.84
Energy contribution -23.90
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.38
Structure conservation index 0.84
SVM decision value 0.01
SVM RNA-class probability 0.536291
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17323340 117 - 22407834
GCCGCUCAAAGGAUAUACGAGUGUGCACUCAAAGCUGUGACUUUUUCCAUAGCUGUUGCUGCUGUACACAGAGCUAAAACUCACUCAUAUUGGUUGUUAAUUUCUUC---AUACGAAAAC
..((....(((((...((((((((((((.((((((((((........))))))).)))..).))))))).(((......)))...........))))....))))).---...))..... ( -25.80)
>DroSec_CAF1 21006 117 - 1
GCCGCUCAAAGGAUAUACGAGUGUGCACUCAAAGCUGUGACUUUUUCCAUAGCUCUUGCUGCUGUACACAGAGCUAAAACUCACUCAUAUUGGUUGACAAUUUCUUC---AUACGAAAAC
...(.((((..(((((....((((((((.((((((((((........))))))).)))..).))))))).(((......)))....)))))..)))))..((((...---....)))).. ( -27.00)
>DroEre_CAF1 22841 117 - 1
GCCGCUCAAAGGAUAUACGAGUGUGCACUCAGAGCUGUGACUU-UUCCAUAGCUCUGGCUGCUGUACACGGAGCUAAAACUCACCCAUAUUACUUGCGAAACUUUCU--GAUAACAAAAC
..(((......(((((....(((((((.(((((((((((....-...)))))))))))....))))))).(((......)))....)))))....))).........--........... ( -32.50)
>DroYak_CAF1 16017 120 - 1
GCCGCUCAAAGGAUAUACGAGUGUGCACUCAAAGCUGUGACUUUUUCCAUAGCUCUUGCUGCUGUACACAGAGCUAAAACUCACCCAUAUUGGUUGCCAAAUUUUUUAUAGUUGCAGAAA
(((((((...........))))).))......(((((((........))))))).((((.((((((....(((......))).......((((...))))......)))))).))))... ( -28.40)
>consensus
GCCGCUCAAAGGAUAUACGAGUGUGCACUCAAAGCUGUGACUUUUUCCAUAGCUCUUGCUGCUGUACACAGAGCUAAAACUCACCCAUAUUGGUUGCCAAAUUCUUC___AUACCAAAAC
...((((...(......)..((((((((.((((((((((........))))))).)))..).))))))).)))).............................................. (-23.84 = -23.90 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:55 2006