Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,317,402 – 17,317,515 |
Length | 113 |
Max. P | 0.979244 |
Location | 17,317,402 – 17,317,515 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 95.63 |
Mean single sequence MFE | -25.28 |
Consensus MFE | -22.90 |
Energy contribution | -23.30 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.70 |
Structure conservation index | 0.91 |
SVM decision value | 1.83 |
SVM RNA-class probability | 0.979244 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17317402 113 - 22407834 UGUGAGCAGCAUCUUGUGGUCAGCUUGGUGUUGCAUAAAAAUCCCAUUUAACACAAGGACAUAC----CUCCCCAUUGCGGUUUUUCUCACCCACACAUUGCUCACAUUUCCCAAGU (((((((((..(((((((.......(((..((.......))..))).....)))))))......----........((.(((.......)))))....))))))))).......... ( -25.50) >DroSec_CAF1 15011 113 - 1 UGUGAGCAGCAUCUUGUGGUCAGCUUGGUGUUGCAUAAAAAUCCCAUUUAACACAAGGACAUAC----CACCCCAUUGCGGUUUUCCUCACCCACACAUUGCUCACAUUUCCCAAGU (((((((((((....(((((...(((.((((((.((.........)).)))))).)))....))----))).....)))(((.......))).......)))))))).......... ( -28.50) >DroSim_CAF1 16548 113 - 1 UGUGAGCAGCAUCUUGUGGUCAGCUUGGUGUUGCAUAAAAAUCCCAUUUAACACAAGGACAUAC----CACCCCAUUGCGGUUUUCCUCACCCACACAUUGCUCACAUUUCCCAAGU (((((((((((....(((((...(((.((((((.((.........)).)))))).)))....))----))).....)))(((.......))).......)))))))).......... ( -28.50) >DroEre_CAF1 16987 116 - 1 UGUGAGCAGCAUCUUGUGGUCAGCUUGGUGUUGCAUAAAAAUCCCAUUUAACACAAGGACAUACGUACCACCUCUUUGCGGUUUU-CUCACCCACACAUUUCUCACAUUUCCCAAGU (((((((((((((..((.....))..)))))))).................(.((((((.............)))))).).....-................))))).......... ( -22.02) >DroYak_CAF1 9299 112 - 1 UGUGAGCAGCAUCUUGUGGUCAGCUUGGUGUUGCAUAAAAAUCCCAUUUAACACAAGGACAUAC----CUCCCUUUUGCGGUUUU-CUCACCCACACAUUUCUCACAUUUCCCAAGU (((((((((((((..((.....))..)))))))).................((.((((......----...)))).)).(((...-...)))..........))))).......... ( -21.90) >consensus UGUGAGCAGCAUCUUGUGGUCAGCUUGGUGUUGCAUAAAAAUCCCAUUUAACACAAGGACAUAC____CACCCCAUUGCGGUUUU_CUCACCCACACAUUGCUCACAUUUCCCAAGU (((((((((..(((((((.......(((..((.......))..))).....)))))))..................((.(((.......)))))....))))))))).......... (-22.90 = -23.30 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:49 2006