Locus 6226

Sequence ID 2L_DroMel_CAF1
Location 17,316,429 – 17,316,548
Length 119
Max. P 0.791552
window9949

overview

Window 9

Location 17,316,429 – 17,316,548
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 97.35
Mean single sequence MFE -34.42
Consensus MFE -30.94
Energy contribution -30.75
Covariance contribution -0.19
Combinations/Pair 1.03
Mean z-score -2.07
Structure conservation index 0.90
SVM decision value 0.59
SVM RNA-class probability 0.791552
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17316429 119 - 22407834
UCCUGUGGCAACC-GAAAACCGUUUGAAAUUCUCACGCAUUGCGCCAAAAGCGUUUAAGCUUUGAAACCGUAUUUGAUUGCACCUGACACAUGUCAUGUGUAACUAAGGAGUCGCCACCA
....(((((.(((-(((.((.((((..........(((...)))...(((((......))))).)))).)).)))).((((((.((((....)))).)))))).......)).))))).. ( -30.80)
>DroEre_CAF1 16024 119 - 1
UCCUGUGGCAACG-GAAAACCGUUUGAAAUUCUCACGCAUUGCGCCAAAAGCGUUUAAGCUUUGAAACCGUAUUUGAUUGCACCUGACACAUGUCAUGUGUAACUAAGGAGUCGCCACCA
....(((((((((-(....))))).......(((......((((...(((((......))))).....))))((((.((((((.((((....)))).)))))).)))))))..))))).. ( -35.00)
>DroYak_CAF1 8327 119 - 1
UCCUGUGGCAACG-GAAAACCGUUUGAAAUUCUCACGCAUUGCGCCAAAAGCGUUUAAGCUUUGAAACCGUAUUUGAUUGCACCUGACACAUGUCAUGUGUAACUAAGGAGUCGCCACCA
....(((((((((-(....))))).......(((......((((...(((((......))))).....))))((((.((((((.((((....)))).)))))).)))))))..))))).. ( -35.00)
>DroAna_CAF1 23953 120 - 1
UCCUGUGGCAACCCCGAAACCGUUUGAAAUUCUCACGCAUUGCGCCAAAAGCGUUUAAGCUUUGAAAGCGUAUUUGAUUGCACCUGACACAUGUCAUGUGUAACUAAGGAGUCGCCGCCA
....(((((.((.((......((.(((.....))).))..(((((..(((((......)))))....))))).(((.((((((.((((....)))).)))))).))))).)).))))).. ( -36.90)
>consensus
UCCUGUGGCAACC_GAAAACCGUUUGAAAUUCUCACGCAUUGCGCCAAAAGCGUUUAAGCUUUGAAACCGUAUUUGAUUGCACCUGACACAUGUCAUGUGUAACUAAGGAGUCGCCACCA
....(((((.((.........((.(((.....))).))..((((...(((((......))))).....))))((((.((((((.((((....)))).)))))).))))..)).))))).. (-30.94 = -30.75 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:44 2006