Locus 6222

Sequence ID 2L_DroMel_CAF1
Location 17,311,682 – 17,311,797
Length 115
Max. P 0.935073
window9942

overview

Window 2

Location 17,311,682 – 17,311,797
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 89.57
Mean single sequence MFE -25.40
Consensus MFE -19.46
Energy contribution -19.94
Covariance contribution 0.48
Combinations/Pair 1.07
Mean z-score -2.27
Structure conservation index 0.77
SVM decision value 1.24
SVM RNA-class probability 0.935073
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17311682 115 - 22407834
AUGACAACAAAAUGUUUGCACAAGAUAAAUGUGUAAGCAAGCUGACAACAAGCUAAGGUAAAAAGGCAUUGAAGGUGCGUUUCAUAUGCGUAGGGCUAAAGGAGCUAAACAAUAA
((((.(((....((((((((((.......))))))))))((((.......))))...........((((.....)))))))))))....((..((((.....))))..))..... ( -26.30)
>DroSec_CAF1 9327 115 - 1
AUGACAACAAAAUGUUUGCGCAAGAGAAAUGUGUAAGCAAGCUGACAACAAGCUAAGGUAAAAAGGCAUGGAAGGUUCGUUUCAUAUGCGUAGGGCUAAAGAGGUUAAACAAUAA
.((((..(....((((((((((.......))))))))))((((.((.....((....))......(((((((((.....)))).)))))))..))))...)..))))........ ( -23.80)
>DroSim_CAF1 10813 115 - 1
AUGACAACAAAAUGUUUGCACAAGAUAAAUGUGUAAGCAAGCUGACAACAAGCUAAGGUAAAAAGGCAUGGAAGGUGCGUUUCAUAUGCGUAGGGCUAAAGAAGCUAAACAAUAA
((((.(((....((((((((((.......))))))))))((((.......))))...........((((.....)))))))))))....((..((((.....))))..))..... ( -25.90)
>DroEre_CAF1 11700 115 - 1
AUGACAACAAAAUGUUUGCACAAGAUAAAUGUGUAAGCAAGCUGACAAGAAGCUGAGGUAAAAAGGCACUGAAGGUGCGUGCCAUAUGCGUUAAGCUAGGAAAGGCAAGCAAUAA
.((((.......((((((((((.......))))))))))((((.......))))..((((.....((((.....)))).))))......)))).(((......)))......... ( -28.20)
>DroYak_CAF1 4144 115 - 1
AUGACAACAAAAUGUUUGCACAAGAUAAAUGUGUAAGCAAGCUGACAACAAGCUGAGGUAAAAAGGCAUUGAAGGUGCGUUUCACAUGCGUAAAGCUUUAUACGGAACACAAAAA
............((((((((((.......))))))))))((((.......))))(((((....(.(((((((((.....))))).)))).)...)))))................ ( -22.80)
>consensus
AUGACAACAAAAUGUUUGCACAAGAUAAAUGUGUAAGCAAGCUGACAACAAGCUAAGGUAAAAAGGCAUUGAAGGUGCGUUUCAUAUGCGUAGGGCUAAAGAAGCUAAACAAUAA
((((.(((....((((((((((.......))))))))))((((.......))))...........((((.....)))))))))))..((.....))................... (-19.46 = -19.94 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:36 2006