Locus 6221

Sequence ID 2L_DroMel_CAF1
Location 17,310,815 – 17,310,908
Length 93
Max. P 0.975359
window9941

overview

Window 1

Location 17,310,815 – 17,310,908
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 97.85
Mean single sequence MFE -25.33
Consensus MFE -24.80
Energy contribution -25.47
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.60
Structure conservation index 0.98
SVM decision value 1.75
SVM RNA-class probability 0.975359
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17310815 93 - 22407834
UCGCCGAGUUCCACAAAAUACACACGGACACUGAUCCCACAAUGUUCGCCCUCCCAAUCGCAUCGAUUUGGAAUAUUUGAAUUUUGGAAUUUG
....(((((((((..((((.((..((((((.((......)).))))))...(((.(((((...))))).))).....)).))))))))))))) ( -22.00)
>DroSec_CAF1 8443 93 - 1
UCGCCGAGUUCCACAAAAUACACACGGACACUGAUGCCACAGUGUUCGCCCUCCCAAUCGCAUCGAUUUGGAAUAUUUGAAUUUUGGAAUUUG
....(((((((((..((((.((..(((((((((......)))))))))...(((.(((((...))))).))).....)).))))))))))))) ( -28.00)
>DroSim_CAF1 9929 93 - 1
UCGCCGAGUUCCACAAAAUACACACGGACACUGAUGCCACAGUGUUCGCCCUCCCAAUCGCAUCGAUUUGGUAUAUUUGAAUUUUGGAAUUUG
....(((((((((((((((((...(((((((((......))))))))).....(.(((((...))))).))))).)))).....))))))))) ( -26.00)
>consensus
UCGCCGAGUUCCACAAAAUACACACGGACACUGAUGCCACAGUGUUCGCCCUCCCAAUCGCAUCGAUUUGGAAUAUUUGAAUUUUGGAAUUUG
....(((((((((..((((.((..(((((((((......)))))))))...(((.(((((...))))).))).....)).))))))))))))) (-24.80 = -25.47 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:35 2006