Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,308,872 – 17,308,991 |
Length | 119 |
Max. P | 0.650534 |
Location | 17,308,872 – 17,308,991 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.65 |
Mean single sequence MFE | -24.78 |
Consensus MFE | -16.98 |
Energy contribution | -18.62 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.10 |
Mean z-score | -2.83 |
Structure conservation index | 0.69 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650534 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17308872 119 + 22407834 GUAAAUUAUGCACUCGAAUCCAAGCAUAAAAAAAAAAAAAAAACGAGGGAAUACUCACAACAGUUCGCUGUGUAAACUAAAGAUAGGGAAAGAGCCAACUU-UCCUGAGAUUCCCUUUAA .....((((((............))))))...............((((((((.((((((.(((....))))))............(((((((......)))-)))))))))))))))... ( -30.60) >DroSec_CAF1 6390 111 + 1 GUAAAUUAUGCACCCGAAUCCAAGCAUAAAA--------AAAACGAGGGAAUACUCACAACAGUUCGCUGUGUAAACUAAAGAUAGGGAAAGAGCCAACUU-UCCUGAGAUUCCCUUUAA .....((((((............))))))..--------.....((((((((.((((((.(((....))))))............(((((((......)))-)))))))))))))))... ( -30.60) >DroSim_CAF1 7883 111 + 1 GUAAAUUAUGCACUCGAAUCCAAGCAUAAAA--------AAAACGAGGGAAUACUCACAACAGUUCGCUGUGUAAACUAAAGAUAGGGAAAGAGCCAACUU-UCCUGAGAUUCCCUUUAA .....((((((............))))))..--------.....((((((((.((((((.(((....))))))............(((((((......)))-)))))))))))))))... ( -30.60) >DroEre_CAF1 9050 111 + 1 GUAAAUUAUGCACUCGAAUCCAAGCAUAAAA---------AAACGAGCGAAUACUCACAACAGUUCGCUGUGUAAACUUAAGAUAGGGAAAGAGCCAACUUUUCCCGAGAUUCCCUUUAA .....((((((............))))))..---------....(((.((((.((((((.(((....))))))............(((((((.......)))))))))))))).)))... ( -23.80) >DroYak_CAF1 1341 111 + 1 GUAAAUUAUGCAGUCGAAUCCAAGCAUAAAA---------AAACGAGAAAAUACUCACAACAUUUCGCUGUGUAAACUAAAGAUAGGGAAAGAGCCAACUUUUCCUGAGAUUCCCUUUAA .....((((((((.((((.....(.......---------...)(((......))).......))))))))))))........(((((((((......)))))))))............. ( -19.70) >DroAna_CAF1 17530 94 + 1 GUAAAUUAUGCACCCGAAAC----CCUAAAA--------AAAA-CUGAAAAUAUCCACAACAGUCCUCUGUGUAAACAAAAAACGGGGGG-------------CCUGAGAUUCUCUUUAA ....................----.......--------....-................(((((((((((...........))))))))-------------.)))............. ( -13.40) >consensus GUAAAUUAUGCACUCGAAUCCAAGCAUAAAA________AAAACGAGGGAAUACUCACAACAGUUCGCUGUGUAAACUAAAGAUAGGGAAAGAGCCAACUU_UCCUGAGAUUCCCUUUAA .....((((((............))))))...............((((((((.((((((.(((....))))))............(((((((......))).)))))))))))))))... (-16.98 = -18.62 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:30 2006