Locus 6217

Sequence ID 2L_DroMel_CAF1
Location 17,307,690 – 17,307,793
Length 103
Max. P 0.524320
window9935

overview

Window 5

Location 17,307,690 – 17,307,793
Length 103
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 80.60
Mean single sequence MFE -24.76
Consensus MFE -16.30
Energy contribution -17.36
Covariance contribution 1.06
Combinations/Pair 1.22
Mean z-score -1.33
Structure conservation index 0.66
SVM decision value -0.02
SVM RNA-class probability 0.524320
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17307690 103 - 22407834
UACACGAAUCCUAAUCCCAGGAGCCUGUGGCCCACACAUUACUC--UCGGCCUUU-AGAAAAA--CUUCAAAAUUUGUGGCUUAAAUUUGGGGAGCCGGAAAAAUAUU
........(((...((((..(((((...((((............--..))))...-.(((...--.))).........))))).......))))...)))........ ( -22.34)
>DroSec_CAF1 5204 104 - 1
UACACGAAUCCUAAUCCCAGGAGCCUGUGGCCCACACAUUACUC--UCGGCCUUUUGGAAACA--CUUCAAAAUUUGUGGCUCCAAUUUGGGGAGCCGGAAAAACAUU
........(((...((((.((((((...((((............--..))))(((((((....--.))))))).....))))))......))))...)))........ ( -29.14)
>DroSim_CAF1 6702 104 - 1
UACACGAAUCCUAAUCCCAGGAGCCUGUGGCCCACACAUUACUC--UCGGCCUUUUGGAAACA--CUUCAAAAUUUGUGGCUCCAAUUUGGGGAGCCGGAAAAACAUU
........(((...((((.((((((...((((............--..))))(((((((....--.))))))).....))))))......))))...)))........ ( -29.14)
>DroEre_CAF1 7889 102 - 1
UAACCCAAUCCUAAUCCCAGGAGCCUGUGGCCCACAAAUUACUC--UCGGCCU-UUGG-AACA--UUUAAAAAUUUGUGGCUCUAGUUUGGGGCACCGGAAAAAUAUC
........(((...(((((((((((...((((............--..)))).-....-.(((--..........)))))))))....)))))....)))........ ( -23.04)
>DroYak_CAF1 192 103 - 1
UAUCCCAAUCCUAAUCCCAGGAGCCUGUGGCCCACAAAUUACUC--UCGGCCUUUUGG-AACA--UUUAAAAAUUUGUGGCUCUAAUUUGGGGAACCGGAAAAAUAUU
........(((...(((((((((((...((((............--..))))((((((-(...--)))))))......))))))....)))))....)))........ ( -23.34)
>DroAna_CAF1 16259 99 - 1
-------AACAAAAUCCCAGGAGCCUUUCCCCCCAACAUCACUCUCUCAGCGUUCCGG-AAAAUGUUUCUAAA-UUAAGGCUGAGCUUCUGGGGCCCGGAAAACAACU
-------.......((((((((((......................(((((.((..((-((.....))))...-..)).))))))))))))))).............. ( -21.54)
>consensus
UACACGAAUCCUAAUCCCAGGAGCCUGUGGCCCACACAUUACUC__UCGGCCUUUUGG_AACA__CUUCAAAAUUUGUGGCUCAAAUUUGGGGAGCCGGAAAAAUAUU
........(((...((((.((((((...((((................))))....(....)................))))))......))))...)))........ (-16.30 = -17.36 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:29 2006